prot_P-wetherbeei_contig9747.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig9747.1.1
Unique Name	prot_P-wetherbeei_contig9747.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	449

Homology

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A3C2B7H0_9ACTN (RNA polymerase subunit sigma-24 (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B7H0_9ACTN)

HSP 1 Score: 333 bits (854), Expect = 3.860e-109
Identity = 167/255 (65.49%), Postives = 199/255 (78.04%), Query Frame = 0

Query:    3 DAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRREDPSDQLGDSVNVTGLEFADSAEDRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGFHGSGPIG 257
            DA+LI  +R GD +AF ELYRRHVD+AR+AARAL RS+AD DD+ SEAF+RVLR +Q G GP+VSFRPY++T VRNVFYDR RR +E P+D L D VNV  L+ A S+ED  F  AAFA+LPERWQLVLWHTEVEG+SVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQA +   ++ AC    + LGAYVRDGL+ARDRRK+D HL  C +C  L+ EL   N+ LR+ L+P +LGV A  YL+G  G G +G
Sbjct:    8 DAELIVGARKGDSEAFGELYRRHVDSARAAARALTRSRADADDVTSEAFARVLRALQSGGGPEVSFRPYLITAVRNVFYDRVRRSKEQPTDDLSDEVNVALLDAAQSSEDGAFAAAAFATLPERWQLVLWHTEVEGKSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAHLRDQQQAACRDCSSNLGAYVRDGLSARDRRKVDAHLDGCATCSGLMGELAATNSTLRAALIPALLGVPAAAYLSGLGGGGVVG 262

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A7X9KL94_9ACTN (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KL94_9ACTN)

HSP 1 Score: 339 bits (870), Expect = 7.960e-109
Identity = 171/257 (66.54%), Postives = 201/257 (78.21%), Query Frame = 0

Query:    1 MSDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRREDPSDQLGDSVNVTGLEFADSAEDRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGFHGSGPIG 257
            +SDA+LI S+R GD DA+ ELYRRHVD+A SAARAL RS+AD DD+ SEAF+RVLR +Q G GPDVSFRPY++T+VRNVFYDR RR RE+P+D L D VNV  L+ A S ED  F  AAFA+LPERWQLVLWHTEVEGRSV+EVAPLLGLAPNAVAALAYRAREGLRQA+LQA +       C    A LGAYVRDGL+ARDRR++D HL  C+SC  L+ ELTD N  LRS L+P ++GVS+  YL+   G G +G
Sbjct:   10 LSDAELIGSARKGDSDAYGELYRRHVDSALSAARALTRSRADADDVTSEAFARVLRALQAGGGPDVSFRPYLVTSVRNVFYDRVRRNREEPTDDLSDEVNVALLDSARSQEDGAFAAAAFATLPERWQLVLWHTEVEGRSVAEVAPLLGLAPNAVAALAYRAREGLRQAYLQAHLRDQHAAECRDCAANLGAYVRDGLSARDRRRVDAHLDGCESCTRLMGELTDTNNTLRSALIPALIGVSSTAYLSNLGGKGVLG 266

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A3C1L2H2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L2H2_9ACTN)

HSP 1 Score: 340 bits (871), Expect = 7.580e-105
Identity = 170/257 (66.15%), Postives = 202/257 (78.60%), Query Frame = 0

Query:    1 MSDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRREDPSDQLGDSVNVTGLEFADSAEDRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGFHGSGPIG 257
            +SDA+LI S+R GD DA+ ELYRRHVD+AR+AARAL RS+AD DD+ SEAF+RVLR +Q G GPDVSFRPY++T+VRNVFYDR RR RE+P+D L D VNV  L+ A S ED  F  AAFA+LPERWQLVLWHTEVEGRSV+EVAPLLGLAPNAVAALAYRAREGLRQA+LQA +       C    A LGAYVRDGL+ARDRR++D HL  C+SC  L+ ELTD N  LR+ L+P ++GVS+  YL+   G G +G
Sbjct:   10 LSDAELIGSARKGDSDAYGELYRRHVDSARAAARALTRSRADADDVTSEAFARVLRALQAGGGPDVSFRPYLVTSVRNVFYDRVRRNREEPTDDLSDEVNVALLDSARSQEDGAFAAAAFATLPERWQLVLWHTEVEGRSVAEVAPLLGLAPNAVAALAYRAREGLRQAYLQAHLRDQHAAECRDCAANLGAYVRDGLSARDRRRVDAHLDGCESCTRLMGELTDTNNTLRAALIPALIGVSSTAYLSNLGGKGVLG 266

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: UPI0017B5AECE (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Saccharothrix sp. TaxID=1873460 RepID=UPI0017B5AECE)

HSP 1 Score: 244 bits (624), Expect = 9.910e-75
Identity = 130/252 (51.59%), Postives = 174/252 (69.05%), Query Frame = 0

Query:    2 SDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRRE-DPSDQLGD-SVNVTGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLA 248
            SDA+LI S R GD DA+ +LY RHV AA + AR LARS A+ DD+VS+AF++VL  ++ G GPD SFR Y+LT +R+  YD+ RR R+ + +D + + +   T + F+D+A    +R     AFA LPERWQ VLWHTE+EG+S +EVAPLLGL  N V+ALAYRAREGL+QA+LQ  + + R   C A V +LGA+ R GL+ R+  +++ HL  C +C AL AEL D N  LR ++ PL+LGV A  YLA
Sbjct:   12 SDAELIDSVRAGDIDAYGQLYERHVSAAHNLARQLARSSAEADDLVSDAFAKVLDTLRAGRGPDSSFRAYLLTALRHTAYDKTRRDRKLELADDVAEVAPEATSVPFSDTAVAGLERSMAAKAFARLPERWQTVLWHTEIEGQSPAEVAPLLGLTANGVSALAYRAREGLKQAYLQVHLAETRSERCRATVDRLGAWTRGGLSKRETTQVEAHLDECTNCRALAAELADVNGALRGIIAPLVLGVGATGYLA 263

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: UPI001177329B (sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinokineospora bangkokensis TaxID=1193682 RepID=UPI001177329B)

HSP 1 Score: 244 bits (623), Expect = 5.660e-74
Identity = 135/260 (51.92%), Postives = 171/260 (65.77%), Query Frame = 0

Query:    3 DAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRR-----EDPSDQLGDSVNVTGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGFHGSG 254
            DA+LI + R G    + +LY RHV AAR  AR L+RS A+ DD+VSEAF++VL V++ G GPD +FR Y+LT +RN  YDR RR R     ED S   G       + F D+A    +R     AFA+LPERWQ VLWHTEVEG+  +EVAPLLGL PN V+ALAYRAREGLRQA+LQ  + +A    C A   +LGA+VR GL+ R+  +++ HL  C  C AL AELT+ N  LR+V+ PL+LG +A  YLAG  G G
Sbjct:    5 DAELIAAVRQGRTACYGQLYERHVGAARGLARQLSRSPAEADDLVSEAFAKVLDVLRHGGGPDTAFRAYLLTALRNTAYDRTRRDRRVELTEDVSLAGGVRQEAVAVPFTDTAVAGLERSLAARAFAALPERWQTVLWHTEVEGQGPAEVAPLLGLTPNGVSALAYRAREGLRQAYLQVHLAEAPDRRCHATAERLGAWVRGGLSRRETAQVEAHLDECARCRALAAELTEVNGSLRAVIAPLVLGPAAALYLAGTLGGG 264

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A368T7Z3_9ACTN (RNA polymerase subunit sigma-24 (Fragment) n=3 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T7Z3_9ACTN)

HSP 1 Score: 238 bits (607), Expect = 5.700e-72
Identity = 136/252 (53.97%), Postives = 168/252 (66.67%), Query Frame = 0

Query:    1 MSDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRAR-RRREDPSDQLGDSVNVTGLEFADSAED---RGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLA 248
            M D +LI + R GD  AFA LY RH DAAR  AR L R+ A+VDD+VSE F+RVL ++Q G GP   FRPY+L+TVRNV YDR R  RR+  +D + +S++  G  F D A +   R  +  AF SLPERWQ VLWHTE+EG   +EVAPLLG++ N+VAALAYRAREGLRQA+LQ  +      +C   + +LGAYVRDGLA RD   +D HL  C  C A+ AEL D N  LR V+ PL+ G  A  YLA
Sbjct:   13 MGDDELIDAVRAGDTGAFATLYTRHDDAARRLARQLVRADAEVDDVVSETFARVLGILQRGGGPRDGFRPYLLSTVRNVVYDRYRGERRQVVTDDI-ESLDH-GEPFVDPAVEGLERSLIAQAFLSLPERWQSVLWHTEIEGAKPAEVAPLLGISANSVAALAYRAREGLRQAYLQMHLAGGASESCRPALDRLGAYVRDGLAKRDTAVVDRHLDGCADCRAVYAELMDVNLGLRGVIAPLLAGPGAAGYLA 262

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A2W4L4N5_9PSEU (RNA polymerase subunit sigma (Fragment) n=1 Tax=Thermocrispum agreste TaxID=37925 RepID=A0A2W4L4N5_9PSEU)

HSP 1 Score: 241 bits (614), Expect = 6.670e-72
Identity = 128/255 (50.20%), Postives = 176/255 (69.02%), Query Frame = 0

Query:    2 SDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRR-----EDPSDQLGDSVNVTGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLA 248
            SDA+LI + R+G+  A+  LY RHV AA + AR LARS A+ DD+V+EAF+++L  ++ G GPD +FR Y+LT++R+V YD+ARR +     ED S+  G       + F+D+A    +R     AFA LPERWQ+VLWHTE+E ++ +E+APLLGL+PNAV+ALAYRARE LRQA+LQ  +T+     C A   +LGA+ RDGL+ R+R +++ HL  C  C AL AEL D N  LR+V+ PL+LG +A  YLA
Sbjct:   32 SDAELIAAVRNGNTSAYGTLYERHVGAAYNLARQLARSNAEADDLVAEAFAKLLDTLRAGKGPDSAFRAYLLTSLRHVAYDKARREKRIDLNEDMSEVTGALGGALTVPFSDTAVAGLERSMAAQAFARLPERWQMVLWHTEIEQQTPAELAPLLGLSPNAVSALAYRAREALRQAYLQVHLTETAAERCRATADRLGAWTRDGLSKRERAQVENHLDNCADCRALAAELADINGALRAVVAPLVLGGAALGYLA 286

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A428YBL5_KIBAR (RNA polymerase subunit sigma (Fragment) n=1 Tax=Kibdelosporangium aridum TaxID=2030 RepID=A0A428YBL5_KIBAR)

HSP 1 Score: 238 bits (608), Expect = 1.320e-71
Identity = 130/255 (50.98%), Postives = 170/255 (66.67%), Query Frame = 0

Query:    2 SDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRREDPSDQLGDSVNV-----TGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLA 248
            SDA+LI S R G   A+  LY RHV AA + AR L RS+A+ DD+VSEAF++VL  ++ G GPD +FR Y+LT +R+  YD+ RR   D   +L D V       T + F+D+A    +R     AFA LPERWQ VLWHTEVEG+S +EVAP+LGL PN V+ALAYRAREGLRQA+LQ  + ++    C+A   +LGA+ RDGL+ R+  +++ HL  C+ C AL  EL D N+ +R V+ PLILGV A  YLA
Sbjct:   12 SDAELIESVRKGTVSAYGSLYERHVGAAYNLARQLTRSQAEADDLVSEAFAKVLDTLRAGRGPDSAFRAYLLTALRHTAYDKTRR---DKRVELSDDVTTVAGADTAVPFSDTAVAGLERSLAARAFARLPERWQAVLWHTEVEGQSPAEVAPILGLTPNGVSALAYRAREGLRQAYLQVHLAESTNERCKATAERLGAWTRDGLSKRETAQVEAHLDECERCRALAMELADVNSGMRVVIAPLILGVGALGYLA 263

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: UPI001177FE42 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Allokutzneria sp. NRRL B-24872 TaxID=1137961 RepID=UPI001177FE42)

HSP 1 Score: 238 bits (607), Expect = 2.300e-71
Identity = 127/253 (50.20%), Postives = 169/253 (66.80%), Query Frame = 0

Query:    3 DAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRRE----DPSDQLGDSVNVTGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLA 248
            DA+LI   R+G  +A+ +LY RHV AA + AR LARS A+ DD+VSEAF++VL  ++GG GPD +FR Y+LT +R+  YD+ RR R+    D    + D+  V  + F D+A    DR     AFA LPERWQ VLWHTE+EG+S +EVAP+LGL PN V+ALAYRAREGLRQA+LQ  +       C A + +LGA+ RDGL+ R+  ++++HL  CD C  L AEL + N  LR V+ PL+LG +   YLA
Sbjct:   13 DAELIIDVRNGSTEAYGQLYERHVAAAYNLARQLARSTAEADDLVSEAFAKVLDTLRGGRGPDAAFRAYLLTALRHTAYDKTRRDRKVEFSDDISGVADAAAVV-VPFTDTAVAGLDRSLAAKAFAKLPERWQAVLWHTEIEGQSPAEVAPILGLTPNGVSALAYRAREGLRQAYLQVHVGAGTEEHCRATIDRLGAWTRDGLSRRETAQVEQHLDNCDRCRVLAAELGEVNGALRLVIAPLVLGGAVTAYLA 264

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BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Match: A0A6B2DL43_9PSEU (Sigma-70 family RNA polymerase sigma factor (Fragment) n=4 Tax=Amycolatopsis TaxID=1813 RepID=A0A6B2DL43_9PSEU)

HSP 1 Score: 235 bits (599), Expect = 5.260e-71
Identity = 132/278 (47.48%), Postives = 177/278 (63.67%), Query Frame = 0

Query:    2 SDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEAFSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRR-----EDPSDQLGDSVNVTGLEFADSAE---DRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGLAPNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAARDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGFHGSGPIGRARHLARTHVIATA 271
            SDA+LI   R G   ++  LY RH  AA + AR LARS ++ DD+VSEAF++VL  ++GG GPD +FR Y+LT +R+  YDR R+ R     ED S+  G +     + F+D+A    +R     AFA LPERWQ VLWHTE+E +S +EVAPLLGL  N V+ALAYRAREGLRQA+LQ  + +     C A   +LGA+ RDGL+ R+R +++ HL  C++C AL AEL D N  LR+++ P++LG +A  YLA       IG A+  A T   A A
Sbjct:   12 SDAELIAEVRSGKIASYGALYERHTGAAHNLARQLARSSSEADDLVSEAFAKVLDTLRGGKGPDTAFRAYLLTALRHTAYDRTRKERRVDLNEDMSEVGGAAAEALTVPFSDTAVAGLERTMAAKAFARLPERWQAVLWHTEIEQQSPAEVAPLLGLTANGVSALAYRAREGLRQAYLQVHLQENAEERCRACADRLGAWTRDGLSKRERSQVENHLDECENCRALAAELADVNGGLRAIIAPIVLGGAALGYLA------TIGAAKASAATAATAGA 283

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig9747.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3C2B7H0_9ACTN	3.860e-109	65.49	RNA polymerase subunit sigma-24 (Fragment) n=1 Tax...	[more]
A0A7X9KL94_9ACTN	7.960e-109	66.54	Sigma-70 family RNA polymerase sigma factor (Fragm...	[more]
A0A3C1L2H2_9ACTN	7.580e-105	66.15	Uncharacterized protein n=1 Tax=Acidimicrobiaceae ...	[more]
UPI0017B5AECE	9.910e-75	51.59	Sigma-70 family RNA polymerase sigma factor n=2 Ta...	[more]
UPI001177329B	5.660e-74	51.92	sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A368T7Z3_9ACTN	5.700e-72	53.97	RNA polymerase subunit sigma-24 (Fragment) n=3 Tax...	[more]
A0A2W4L4N5_9PSEU	6.670e-72	50.20	RNA polymerase subunit sigma (Fragment) n=1 Tax=Th...	[more]
A0A428YBL5_KIBAR	1.320e-71	50.98	RNA polymerase subunit sigma (Fragment) n=1 Tax=Ki...	[more]
UPI001177FE42	2.300e-71	50.20	sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A6B2DL43_9PSEU	5.260e-71	47.48	Sigma-70 family RNA polymerase sigma factor (Fragm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 16..169 e-value: 1.5E-20 score: 71.4
None	No IPR available	GENE3D	1.10.1740.10		coord: 1..103 e-value: 1.2E-19 score: 72.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 321..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..351
None	No IPR available	PANTHER	PTHR43133:SF8	ECF RNA POLYMERASE SIGMA-E FACTOR-RELATED	coord: 1..174
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 21..88 e-value: 1.1E-11 score: 44.4
IPR027383	Putative zinc-finger	PFAM	PF13490	zf-HC2	coord: 183..216 e-value: 8.7E-9 score: 35.5
IPR041916	Anti-sigma factor, zinc-finger domain superfamily	GENE3D	1.10.10.1320		coord: 184..236 e-value: 4.5E-10 score: 41.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 105..173 e-value: 1.2E-8 score: 36.4
IPR039425	RNA polymerase sigma-70 like	PANTHER	PTHR43133	RNA POLYMERASE ECF-TYPE SIGMA FACTO	coord: 1..174
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 1..92
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 108..169

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig9747	contig	P-wetherbeei_contig9747:55..1401 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig9747.1.1	mRNA_P-wetherbeei_contig9747.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig9747 55..1416 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig9747.1.1 ID=prot_P-wetherbeei_contig9747.1.1|Name=mRNA_P-wetherbeei_contig9747.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
MSDAQLITSSRHGDGDAFAELYRRHVDAARSAARALARSKADVDDIVSEA
FSRVLRVMQGGAGPDVSFRPYVLTTVRNVFYDRARRRREDPSDQLGDSVN
VTGLEFADSAEDRGFVGAAFASLPERWQLVLWHTEVEGRSVSEVAPLLGL
APNAVAALAYRAREGLRQAFLQAQMTKARRPACEAIVAQLGAYVRDGLAA
RDRRKIDEHLATCDSCPALVAELTDANTVLRSVLVPLILGVSAQRYLAGF
HGSGPIGRARHLARTHVIATAAAAAAGVLVIGGVAAATFRRDAVSATSQQ
ASEPPSPTVRIVPEATALVEPTTTVPPTVPPPTTSTTTSTSTTTTTAPTT
PATTSTVTVTPPFVPVAPTAAKPKPKPVPVSTTSPTTTPATAPAPTTTST
VPRNMHLDVTQITPAIAGTPVRVHLAMTGAGAALPSLSIDVPLPAGVTI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014284	RNA_pol_sigma-70_dom
IPR007627	RNA_pol_sigma70_r2
IPR027383	Znf_put
IPR041916	Anti_sigma_zinc_sf
IPR036388	WH-like_DNA-bd_sf
IPR039425	RNA_pol_sigma-70-like
IPR013325	RNA_pol_sigma_r2
IPR013324	RNA_pol_sigma_r3/r4-like