prot_P-wetherbeei_contig8867.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8867.3.1
Unique Nameprot_P-wetherbeei_contig8867.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length42
Homology
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A2W0BRK9_9BACT (DNA-binding response regulator (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BRK9_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 4.710e-20
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 41
            YVDDRTIDSH+KRLRKKFKA D+DFDMIETLYGVGYRFKEL
Sbjct:   35 YVDDRTIDSHVKRLRKKFKASDNDFDMIETLYGVGYRFKEL 75          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A7C5CE60_9HYPH (DNA-binding response regulator n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5CE60_9HYPH)

HSP 1 Score: 83.6 bits (205), Expect = 5.690e-20
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSH+KRLRKKFK VDDDFDMIETLYGVGYRFKE
Sbjct:   55 YVDDRTIDSHVKRLRKKFKIVDDDFDMIETLYGVGYRFKE 94          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A5C8CXK1_9BRAD (DNA-binding response regulator (Fragment) n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A5C8CXK1_9BRAD)

HSP 1 Score: 82.8 bits (203), Expect = 8.990e-20
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSHIKRLRKKFKA DDDF+MIETLYGVGYRFKE
Sbjct:   46 YVDDRTIDSHIKRLRKKFKAADDDFEMIETLYGVGYRFKE 85          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A0F2P693_9HYPH (Transcriptional regulator (Fragment) n=1 Tax=Hoeflea sp. BRH_c9 TaxID=1629712 RepID=A0A0F2P693_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 1.710e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSHIKRLRKKFK VDDDFDMIETLYGVGYRF+E
Sbjct:   69 YVDDRTIDSHIKRLRKKFKMVDDDFDMIETLYGVGYRFRE 108          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A840AQC8_9HYPH (Two-component system response regulator ChvI n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A840AQC8_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.860e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE
Sbjct:  195 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 234          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A4Q9VT14_9HYPH (Response regulator transcription factor n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A4Q9VT14_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-19
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 41
            YVDDRTIDSHIKRLRKKFKAVDDDF+MIETLYGVGYRFKE+
Sbjct:  193 YVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFKEM 233          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A2C9DE24_9HYPH (Transcriptional regulatory protein BaeR n=4 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=A0A2C9DE24_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-19
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 41
            YVDDRTIDSHIKRLRKKFKA+DDDFDMIETLYGVGYRF+E+
Sbjct:  193 YVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFREM 233          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A7Y1Z1R1_9HYPH (Winged helix-turn-helix domain-containing protein n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y1Z1R1_9HYPH)

HSP 1 Score: 80.9 bits (198), Expect = 3.400e-19
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSHIKRLRKKFK +DDDFD+IETLYGVGYRF+E
Sbjct:   27 YVDDRTIDSHIKRLRKKFKMIDDDFDVIETLYGVGYRFRE 66          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A530QTP2_9HYPH (DNA-binding response regulator (Fragment) n=3 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530QTP2_9HYPH)

HSP 1 Score: 83.2 bits (204), Expect = 3.720e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 40
            YVDDRTIDSHIKRLRKKFKAVDDDF+MIETLYGVGYRF+E
Sbjct:  114 YVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFRE 153          
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A4Y8RNU6_9HYPH (Response regulator transcription factor n=46 Tax=root TaxID=1 RepID=A0A4Y8RNU6_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 3.740e-19
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 0
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 41
            YVDDRTIDSHIKRLRKKFKA+DDDFDMIETLYGVGYRF+E+
Sbjct:  196 YVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFREV 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W0BRK9_9BACT4.710e-2092.68DNA-binding response regulator (Fragment) n=1 Tax=... [more]
A0A7C5CE60_9HYPH5.690e-2095.00DNA-binding response regulator n=1 Tax=Devosia sp.... [more]
A0A5C8CXK1_9BRAD8.990e-2095.00DNA-binding response regulator (Fragment) n=1 Tax=... [more]
A0A0F2P693_9HYPH1.710e-1995.00Transcriptional regulator (Fragment) n=1 Tax=Hoefl... [more]
A0A840AQC8_9HYPH1.860e-19100.00Two-component system response regulator ChvI n=2 T... [more]
A0A4Q9VT14_9HYPH2.520e-1995.12Response regulator transcription factor n=2 Tax=Hy... [more]
A0A2C9DE24_9HYPH2.520e-1992.68Transcriptional regulatory protein BaeR n=4 Tax=Pl... [more]
A0A7Y1Z1R1_9HYPH3.400e-1990.00Winged helix-turn-helix domain-containing protein ... [more]
A0A530QTP2_9HYPH3.720e-1995.00DNA-binding response regulator (Fragment) n=3 Tax=... [more]
A0A4Y8RNU6_9HYPH3.740e-1992.68Response regulator transcription factor n=46 Tax=r... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001867OmpR/PhoB-type DNA-binding domainPFAMPF00486Trans_reg_Ccoord: 2..38
e-value: 3.3E-11
score: 43.1
IPR001867OmpR/PhoB-type DNA-binding domainPROSITEPS51755OMPR_PHOBcoord: 1..40
score: 22.483459
IPR001867OmpR/PhoB-type DNA-binding domainCDDcd00383trans_reg_Ccoord: 1..38
e-value: 6.96396E-13
score: 54.4073
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..40
e-value: 6.2E-12
score: 47.1
IPR016032Signal transduction response regulator, C-terminal effectorSUPERFAMILY46894C-terminal effector domain of the bipartite response regulatorscoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8867contigP-wetherbeei_contig8867:2558..2683 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8867.3.1mRNA_P-wetherbeei_contig8867.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8867 2558..2683 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8867.3.1 ID=prot_P-wetherbeei_contig8867.3.1|Name=mRNA_P-wetherbeei_contig8867.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001867OmpR/PhoB-type_DNA-bd
IPR036388WH-like_DNA-bd_sf
IPR016032Sig_transdc_resp-reg_C-effctor