mRNA_P-wetherbeei_contig8867.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8867.3.1
Unique NamemRNA_P-wetherbeei_contig8867.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A2W0BRK9_9BACT (DNA-binding response regulator (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BRK9_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 4.710e-20
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 123
            YVDDRTIDSH+KRLRKKFKA D+DFDMIETLYGVGYRFKEL
Sbjct:   35 YVDDRTIDSHVKRLRKKFKASDNDFDMIETLYGVGYRFKEL 75
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A7C5CE60_9HYPH (DNA-binding response regulator n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5CE60_9HYPH)

HSP 1 Score: 83.6 bits (205), Expect = 5.690e-20
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSH+KRLRKKFK VDDDFDMIETLYGVGYRFKE
Sbjct:   55 YVDDRTIDSHVKRLRKKFKIVDDDFDMIETLYGVGYRFKE 94
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A5C8CXK1_9BRAD (DNA-binding response regulator (Fragment) n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A5C8CXK1_9BRAD)

HSP 1 Score: 82.8 bits (203), Expect = 8.990e-20
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSHIKRLRKKFKA DDDF+MIETLYGVGYRFKE
Sbjct:   46 YVDDRTIDSHIKRLRKKFKAADDDFEMIETLYGVGYRFKE 85
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A0F2P693_9HYPH (Transcriptional regulator (Fragment) n=1 Tax=Hoeflea sp. BRH_c9 TaxID=1629712 RepID=A0A0F2P693_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 1.710e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSHIKRLRKKFK VDDDFDMIETLYGVGYRF+E
Sbjct:   69 YVDDRTIDSHIKRLRKKFKMVDDDFDMIETLYGVGYRFRE 108
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A840AQC8_9HYPH (Two-component system response regulator ChvI n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A840AQC8_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.860e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE
Sbjct:  195 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 234
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A4Q9VT14_9HYPH (Response regulator transcription factor n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A4Q9VT14_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-19
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 123
            YVDDRTIDSHIKRLRKKFKAVDDDF+MIETLYGVGYRFKE+
Sbjct:  193 YVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFKEM 233
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A2C9DE24_9HYPH (Transcriptional regulatory protein BaeR n=4 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=A0A2C9DE24_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-19
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 123
            YVDDRTIDSHIKRLRKKFKA+DDDFDMIETLYGVGYRF+E+
Sbjct:  193 YVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFREM 233
[Close]
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A7Y1Z1R1_9HYPH (Winged helix-turn-helix domain-containing protein n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y1Z1R1_9HYPH)

HSP 1 Score: 80.9 bits (198), Expect = 3.400e-19
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSHIKRLRKKFK +DDDFD+IETLYGVGYRF+E
Sbjct:   27 YVDDRTIDSHIKRLRKKFKMIDDDFDVIETLYGVGYRFRE 66
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BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A530QTP2_9HYPH (DNA-binding response regulator (Fragment) n=3 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530QTP2_9HYPH)

HSP 1 Score: 83.2 bits (204), Expect = 3.720e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKE 120
            YVDDRTIDSHIKRLRKKFKAVDDDF+MIETLYGVGYRF+E
Sbjct:  114 YVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFRE 153
[Close]
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Match: A0A4Y8RNU6_9HYPH (Response regulator transcription factor n=46 Tax=root TaxID=1 RepID=A0A4Y8RNU6_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 3.740e-19
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL 123
            YVDDRTIDSHIKRLRKKFKA+DDDFDMIETLYGVGYRF+E+
Sbjct:  196 YVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFREV 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8867.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W0BRK9_9BACT4.710e-2092.68DNA-binding response regulator (Fragment) n=1 Tax=... [more]
A0A7C5CE60_9HYPH5.690e-2095.00DNA-binding response regulator n=1 Tax=Devosia sp.... [more]
A0A5C8CXK1_9BRAD8.990e-2095.00DNA-binding response regulator (Fragment) n=1 Tax=... [more]
A0A0F2P693_9HYPH1.710e-1995.00Transcriptional regulator (Fragment) n=1 Tax=Hoefl... [more]
A0A840AQC8_9HYPH1.860e-19100.00Two-component system response regulator ChvI n=2 T... [more]
A0A4Q9VT14_9HYPH2.520e-1995.12Response regulator transcription factor n=2 Tax=Hy... [more]
A0A2C9DE24_9HYPH2.520e-1992.68Transcriptional regulatory protein BaeR n=4 Tax=Pl... [more]
A0A7Y1Z1R1_9HYPH3.400e-1990.00Winged helix-turn-helix domain-containing protein ... [more]
A0A530QTP2_9HYPH3.720e-1995.00DNA-binding response regulator (Fragment) n=3 Tax=... [more]
A0A4Y8RNU6_9HYPH3.740e-1992.68Response regulator transcription factor n=46 Tax=r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8867contigP-wetherbeei_contig8867:2558..2683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog69279.BG36_06010
Preferred namechvI
PFAMsResponse_reg,Trans_reg_C
Model size126
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K14981
KEGG Pathwayko02020,map02020
KEGG ModuleM00520
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Exons1
Evalue3.27e-20
EggNOG OGsCOG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2TR43@28211|Alphaproteobacteria,43HB4@69277|Phyllobacteriaceae
DescriptionConsisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Cds size126
COG categoryKT
BRITEko00000,ko00001,ko00002,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187063.7300942-CDS-P-wetherbeei_contig8867:2557..26831683187063.7300942-CDS-P-wetherbeei_contig8867:2557..2683Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8867 2558..2683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8867.3.1prot_P-wetherbeei_contig8867.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8867 2558..2683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8867.3.1

>prot_P-wetherbeei_contig8867.3.1 ID=prot_P-wetherbeei_contig8867.3.1|Name=mRNA_P-wetherbeei_contig8867.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
YVDDRTIDSHIKRLRKKFKAVDDDFDMIETLYGVGYRFKEL*
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mRNA from alignment at P-wetherbeei_contig8867:2558..2683-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8867.3.1 ID=mRNA_P-wetherbeei_contig8867.3.1|Name=mRNA_P-wetherbeei_contig8867.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig8867:2558..2683- (Phaeothamnion wetherbeei SAG_119_79)
TATGTCGACGACCGTACCATCGACAGCCACATCAAGCGGCTGCGCAAGAA
GTTCAAGGCAGTCGACGACGACTTCGACATGATCGAGACGCTGTACGGCG
TCGGTTACCGCTTCAAGGAACTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8867:2558..2683-

>mRNA_P-wetherbeei_contig8867.3.1 ID=mRNA_P-wetherbeei_contig8867.3.1|Name=mRNA_P-wetherbeei_contig8867.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig8867:2558..2683- (Phaeothamnion wetherbeei SAG_119_79)
TATGTCGACGACCGTACCATCGACAGCCACATCAAGCGGCTGCGCAAGAA
GTTCAAGGCAGTCGACGACGACTTCGACATGATCGAGACGCTGTACGGCG
TCGGTTACCGCTTCAAGGAACTCTGA
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