prot_P-wetherbeei_contig8832.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8832.1.1
Unique Nameprot_P-wetherbeei_contig8832.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length240
Homology
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: A0A6H5JGQ1_9PHAE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.240e-22
Identity = 67/161 (41.61%), Postives = 88/161 (54.66%), Query Frame = 0 
Query:   37 LLAVEVTYELEDPRTGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIALRDPQLAVLFNGSLLETTDPSWPPSVDXXXXXXXXXXAXXXXXXXXRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIR 197
            ++ VEV +EL  PR+G+VFK         G  A H YTTY H  +D+DGPRCWFPC+D+A+  + YDVT+ +  P++   FNG LLE+T        D XXXXXX            R +   C    YRF TE     RAVGLAVG F    +  + R++
Sbjct:  230 VICVEVEWELLHPRSGVVFKAARE-----GFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESTTLD---DDDGXXXXXXANGGTDGMAVRKRTSYSTC----YRFSTETLTAARAVGLAVGRFAAWDVPHSPRVK 378
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.390e-21
Identity = 63/163 (38.65%), Postives = 83/163 (50.92%), Query Frame = 0 
Query:   37 LLAVEVTYELEDPRTGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIALRDPQLAVLFNGSLLE--TTDPSWPPSVDXXXXXXXXXXAXXXXXXXXRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIR 197
            ++ VEV +EL  PR+G+VFK         G  A H YTTY H  +D+DGPRCWFPC+D+A+  + YDVT+ +  P++   FNG LLE  T D       D          A        R +   C    YRF TE     RAVGLAVG F    +  + R++
Sbjct:  233 VICVEVEWELLHPRSGVVFKAARE-----GFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESITLDDDXXXXGDVGVNGGTDGMAVGK-----RTSYSTC----YRFSTETLTAARAVGLAVGRFAAWDVPQSPRVK 381
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 0 
Query:   34 TNSLLAVE----VTYELEDPRTGLVFKRDENVSGGGGGVAP-HCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIAL 108
            T S LA+     V+YEL +P  GL++    N SG      P HC TTY H AVDVDGPRCWFPC+D  A+  V+++ + L
Sbjct:  144 TASPLAIARTRAVSYELYEPAAGLIWCHGGNQSGPAARRLPAHCRTTYAHGAVDVDGPRCWFPCVDAPAQSCVFELVLDL 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGQ1_9PHAE3.240e-2241.61Transcription initiation factor TFIID subunit 2 n=... [more]
D7G4X2_ECTSI1.390e-2138.65Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA1.480e-1147.50Transcription initiation factor TFIID subunit 2 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042097Aminopeptidase N-like , N-terminal domain superfamliyGENE3D2.60.40.1730tricorn interacting facor f3 domaincoord: 30..183
e-value: 2.4E-8
score: 36.4
IPR042097Aminopeptidase N-like , N-terminal domain superfamliySUPERFAMILY63737Leukotriene A4 hydrolase N-terminal domaincoord: 37..147
IPR037813Transcription initiation factor TFIID subunit 2PANTHERPTHR15137TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 34..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8832contigP-wetherbeei_contig8832:1883..2602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8832.1.1mRNA_P-wetherbeei_contig8832.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8832 1882..2602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8832.1.1 ID=prot_P-wetherbeei_contig8832.1.1|Name=mRNA_P-wetherbeei_contig8832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
SVNGAVPFAVRGNSDSVSKNGGGSGGRNGISSITNSLLAVEVTYELEDPR
TGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRV
VYDVTIALRDPQLAVLFNGSLLETTDPSWPPSVDWPPFVEAPPLAAAAAA
AADRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIRVAL
LSPSPPFLAATAPPAAALAPVLATSEGDDAMDVADEIDGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042097Aminopeptidase_N-like_N_sf
IPR037813TAF2