mRNA_P-wetherbeei_contig8832.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8832.1.1
Unique NamemRNA_P-wetherbeei_contig8832.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: A0A6H5JGQ1_9PHAE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.240e-22
Identity = 67/161 (41.61%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:  109 LLAVEVTYELEDPRTGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIALRDPQLAVLFNGSLLETTDPSWPPSVDXXXXXXXXXXAXXXXXXXXRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIR 591
            ++ VEV +EL  PR+G+VFK         G  A H YTTY H  +D+DGPRCWFPC+D+A+  + YDVT+ +  P++   FNG LLE+T        D XXXXXX            R +   C    YRF TE     RAVGLAVG F    +  + R++
Sbjct:  230 VICVEVEWELLHPRSGVVFKAARE-----GFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESTTLD---DDDGXXXXXXANGGTDGMAVRKRTSYSTC----YRFSTETLTAARAVGLAVGRFAAWDVPHSPRVK 378
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.390e-21
Identity = 63/163 (38.65%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:  109 LLAVEVTYELEDPRTGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIALRDPQLAVLFNGSLLE--TTDPSWPPSVDXXXXXXXXXXAXXXXXXXXRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIR 591
            ++ VEV +EL  PR+G+VFK         G  A H YTTY H  +D+DGPRCWFPC+D+A+  + YDVT+ +  P++   FNG LLE  T D       D          A        R +   C    YRF TE     RAVGLAVG F    +  + R++
Sbjct:  233 VICVEVEWELLHPRSGVVFKAARE-----GFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESITLDDDXXXXGDVGVNGGTDGMAVGK-----RTSYSTC----YRFSTETLTAARAVGLAVGRFAAWDVPQSPRVK 381
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BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:  100 TNSLLAVE----VTYELEDPRTGLVFKRDENVSGGGGGVAP-HCYTTYRHTAVDVDGPRCWFPCLDNAAKRVVYDVTIAL 324
            T S LA+     V+YEL +P  GL++    N SG      P HC TTY H AVDVDGPRCWFPC+D  A+  V+++ + L
Sbjct:  144 TASPLAIARTRAVSYELYEPAAGLIWCHGGNQSGPAARRLPAHCRTTYAHGAVDVDGPRCWFPCVDAPAQSCVFELVLDL 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGQ1_9PHAE3.240e-2241.61Transcription initiation factor TFIID subunit 2 n=... [more]
D7G4X2_ECTSI1.390e-2138.65Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA1.480e-1147.50Transcription initiation factor TFIID subunit 2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8832contigP-wetherbeei_contig8832:1882..2602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4X2
Preferred nameTAF2
PFAMsBromodomain,Peptidase_M1
Model size723
Max annot lvl2759|Eukaryota
KEGG koko:K03128
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000123,GO:0000228,GO:0000278,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033276,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044839,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Exons1
Evalue2.28e-22
EggNOG OGsKOG1932@1|root,KOG1932@2759|Eukaryota
Descriptionobsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
Cds size720
COG categoryS
BRITEko00000,ko00001,ko01002,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.1095414-CDS-P-wetherbeei_contig8832:1882..26021683187062.1095414-CDS-P-wetherbeei_contig8832:1882..2602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8832 1883..2602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8832.1.1prot_P-wetherbeei_contig8832.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8832 1883..2602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8832.1.1

>prot_P-wetherbeei_contig8832.1.1 ID=prot_P-wetherbeei_contig8832.1.1|Name=mRNA_P-wetherbeei_contig8832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
SVNGAVPFAVRGNSDSVSKNGGGSGGRNGISSITNSLLAVEVTYELEDPR
TGLVFKRDENVSGGGGGVAPHCYTTYRHTAVDVDGPRCWFPCLDNAAKRV
VYDVTIALRDPQLAVLFNGSLLETTDPSWPPSVDWPPFVEAPPLAAAAAA
AADRAAGGGCPVWTYRFCTEMAVHPRAVGLAVGPFRVRPLRDAERIRVAL
LSPSPPFLAATAPPAAALAPVLATSEGDDAMDVADEIDGA
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mRNA from alignment at P-wetherbeei_contig8832:1882..2602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8832.1.1 ID=mRNA_P-wetherbeei_contig8832.1.1|Name=mRNA_P-wetherbeei_contig8832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=721bp|location=Sequence derived from alignment at P-wetherbeei_contig8832:1882..2602- (Phaeothamnion wetherbeei SAG_119_79)
AGTGTCAACGGGGCCGTCCCATTCGCGGTCAGGGGAAACAGTGATTCTGT
CAGCAAGAACGGCGGCGGCAGCGGTGGTCGCAACGGCATCAGTAGCATTA
CAAACTCGTTGCTCGCGGTGGAAGTCACTTACGAGCTGGAGGACCCGCGC
ACGGGGCTCGTCTTCAAGCGCGACGAGAACGTCAGCGGCGGTGGCGGCGG
CGTCGCCCCACACTGCTACACCACATACCGCCACACCGCAGTGGACGTCG
ACGGCCCGCGCTGCTGGTTCCCCTGCCTCGATAACGCCGCCAAGCGGGTG
GTTTACGACGTAACGATCGCCCTGCGGGACCCGCAGCTGGCGGTCCTTTT
CAACGGTTCCTTGTTGGAGACGACGGACCCAAGCTGGCCACCGTCGGTCG
ACTGGCCGCCGTTCGTGGAGGCGCCGCCGTTGGCGGCGGCGGCTGCGGCA
GCGGCGGACAGGGCGGCGGGCGGCGGCTGTCCCGTCTGGACGTACCGGTT
CTGCACCGAGATGGCGGTGCACCCGCGGGCGGTTGGTTTGGCGGTAGGAC
CGTTTCGGGTCCGTCCGCTGAGGGACGCGGAGCGGATCCGTGTGGCGCTT
CTGTCGCCGTCGCCGCCGTTCCTGGCGGCGACGGCGCCGCCGGCAGCAGC
GCTGGCGCCCGTGCTGGCAACGAGTGAAGGAGACGACGCCATGGACGTGG
CAGACGAAATTGATGGCGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8832:1882..2602-

>mRNA_P-wetherbeei_contig8832.1.1 ID=mRNA_P-wetherbeei_contig8832.1.1|Name=mRNA_P-wetherbeei_contig8832.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig8832:1882..2602- (Phaeothamnion wetherbeei SAG_119_79)
AGTGTCAACGGGGCCGTCCCATTCGCGGTCAGGGGAAACAGTGATTCTGT
CAGCAAGAACGGCGGCGGCAGCGGTGGTCGCAACGGCATCAGTAGCATTA
CAAACTCGTTGCTCGCGGTGGAAGTCACTTACGAGCTGGAGGACCCGCGC
ACGGGGCTCGTCTTCAAGCGCGACGAGAACGTCAGCGGCGGTGGCGGCGG
CGTCGCCCCACACTGCTACACCACATACCGCCACACCGCAGTGGACGTCG
ACGGCCCGCGCTGCTGGTTCCCCTGCCTCGATAACGCCGCCAAGCGGGTG
GTTTACGACGTAACGATCGCCCTGCGGGACCCGCAGCTGGCGGTCCTTTT
CAACGGTTCCTTGTTGGAGACGACGGACCCAAGCTGGCCACCGTCGGTCG
ACTGGCCGCCGTTCGTGGAGGCGCCGCCGTTGGCGGCGGCGGCTGCGGCA
GCGGCGGACAGGGCGGCGGGCGGCGGCTGTCCCGTCTGGACGTACCGGTT
CTGCACCGAGATGGCGGTGCACCCGCGGGCGGTTGGTTTGGCGGTAGGAC
CGTTTCGGGTCCGTCCGCTGAGGGACGCGGAGCGGATCCGTGTGGCGCTT
CTGTCGCCGTCGCCGCCGTTCCTGGCGGCGACGGCGCCGCCGGCAGCAGC
GCTGGCGCCCGTGCTGGCAACGAGTGAAGGAGACGACGCCATGGACGTGG
CAGACGAAATTGATGGCGCA
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