prot_P-wetherbeei_contig8647.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8647.1.1
Unique Nameprot_P-wetherbeei_contig8647.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length219
Homology
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.140e-53
Identity = 81/121 (66.94%), Postives = 102/121 (84.30%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 121
            MSVTG +G+GMP+IL+HDAEGA+CT+E K GEVYRGILDE+EDNMNI MKD++ T+ RGK + L ++YIRGSQI+ VIVPD+L +A MFKRI +WRKYKGNPPS A++   G  AAI+R+A
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKA 121          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.970e-50
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 121
            MSVTGK GVG+PII++HDAEG I T+E K GE YRG+LDE+EDNMN  + DV  T P GK +++ ++Y+RGSQI FV+VPD L K PMFKRI +WRKYKGNPPS  +  PRG AAAIIR+A
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRKA 121          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 157 bits (396), Expect = 1.340e-45
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRR 120
            MSVTGK GVG+PIIL+HDAEG I T+ET+ GE+YRG+LDE+EDNMN+ ++DV  TN  GKE+++  +YI+GSQ+ F+I+PD+L KAPMFKRI +W+KY GN P   A G RG AA I ++
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQK 119          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.550e-42
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 121
            MSVTGK G+G+PIILMHD EG I T+E K G++YRG LDE+EDNMN  MKDV  T+  GK++++  ++IRGSQILF + P +L KAPMFKR+  WRK++GN         RG AAAIIR+A
Sbjct:   18 MSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGNISKGEEA--RGQAAAIIRKA 136          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 4.230e-41
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 0
Query:   11 MPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 121
            MPIIL+HDAEG I T+E K GEV RG+LDE+ED+MN+ +KD V TN RGK + L+++YIRG+QI+F IVP++L  APMF RI  WRKYKG+PP  A+ G +G  AAIIR+A
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRKA 111          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U4H9R4_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4H9R4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.000e-40
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA----------GPQPGRGVPAGGRPPPSA 139
            MSVTGK G+G+P IL++DAEG + T+ETK G++YRG+L +SED MN+TM+ V   +  G E+    +Y+RG+Q+  VIVPD+L KAP F+R+  W++YKGNPPS   T  RG AAAIIR+           GP P  G P G   PP A
Sbjct:    1 MSVTGKRGIGVPGILLYDAEGTVVTVETKNGDLYRGLLTDSEDTMNLTMQQVHKRHADGTESTADLLYLRGNQVAMVIVPDMLCKAPAFQRVMRWKEYKGNPPSLGTTEARGQAAAIIRKTQEKRRSMGLGGPDPAGGPPRG---PPGA 146          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.610e-40
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFA-----ATGPRGAAAAIIRRA 121
            M+VTGK GVG+P IL+HD EG   +IE K GE+YRG L+E+EDNMN  +K+ + T+  G    +  VY+RGSQILF++ PD+L  APMFKR+ LW+K+KG  PS         GPRG AAAIIR+A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKA 126          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 142 bits (357), Expect = 1.430e-39
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDL----------LSKAPMFKRIALWRKYKGNPPSFAATG-----PRGAAAAIIRRA 121
            M+VTGK GVG+P IL+HD EG I +IE K GE YRG+LDE+EDNMN  MKD V T+  G  +++ +VY+RGSQILF++ PD+          L  APMFKR+ +W+K+KG+ P+    G     PRG AAAIIR+A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRKA 136          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7R9YBR3_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.720e-39
Identity = 71/133 (53.38%), Postives = 97/133 (72.93%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA-GPQPGRGVPAG 132
            MSVTGK G+G+P IL++DAEG I T+ETK G++YRG L ++ED MN+TM++V   +  G+EA    VYIRG+Q+  ++VPD+L KAP F+R+  W++YKGNPPS      RG AAAIIR+    + G GVP+G
Sbjct:    1 MSVTGKRGIGIPAILLYDAEGTIVTVETKLGDLYRGELTDTEDTMNLTMRNVQKKSAGGQEAHAEVVYIRGNQVAMIMVPDMLCKAPAFQRVTRWKEYKGNPPSLGTQEARGQAAAIIRKTQAKRRGMGVPSG 133          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: K3X3X6_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3X6_GLOUD)

HSP 1 Score: 140 bits (354), Expect = 3.800e-39
Identity = 72/131 (54.96%), Postives = 89/131 (67.94%), Query Frame = 0
Query:    1 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLL-----SKAPMFKRIALWRKYKGNPPSFA-----ATGPRGAAAAIIRRA 121
            M+VTGK GVG+P IL+HD EG I +IE K GE YRG LDE+EDNMN  +KD V T   G    + +VYIRG QILF+I PD+      + APMFKR+ LW+K+KG+ P+         GPRG AAAIIR+A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIELKSGETYRGFLDETEDNMNCVLKDAVRTELNGSTTHVEQVYIRGGQILFIIFPDIYPSLLPTHAPMFKRVKLWKKHKGSIPALGQGGPGGGGPRGQAAAIIRKA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP5_9STRA2.140e-5366.94Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA1.970e-5065.29Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC1.340e-4560.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S3K1R1_9STRA4.550e-4258.68Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A6H5L429_9PHAE4.230e-4162.16Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A6U4H9R4_9STRA2.000e-4050.34Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA2.610e-4054.76Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
D0NPB0_PHYIT1.430e-3952.94Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]
A0A7R9YBR3_9STRA2.720e-3953.38Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
K3X3X6_GLOUD3.800e-3954.96Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..79
e-value: 4.8E-11
score: 52.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 17..78
e-value: 9.0E-14
score: 50.9
NoneNo IPR availableGENE3D2.30.30.100coord: 7..90
e-value: 5.7E-25
score: 88.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..218
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 9..116
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 9..116
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 12..81
e-value: 1.61637E-35
score: 118.392
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 14..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8647contigP-wetherbeei_contig8647:1031..2012 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8647.1.1mRNA_P-wetherbeei_contig8647.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8647 862..2033 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8647.1.1 ID=prot_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp
MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMK
DVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKG
NPPSFAATGPRGAAAAIIRRAGPQPGRGVPAGGRPPPSAYGPGGGGGGSV
GGPSAYGPGGGGGRGGGGGFGGGGYGAGSGAGGYGGGVGRGSYGGGPPGG
GGGYGAGGGGGGGYGVRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034099SmD3
IPR010920LSM_dom_sf