mRNA_P-wetherbeei_contig8647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.480e-52 Identity = 81/121 (66.94%), Postives = 102/121 (84.30%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
MSVTG +G+GMP+IL+HDAEGA+CT+E K GEVYRGILDE+EDNMNI MKD++ T+ RGK + L ++YIRGSQI+ VIVPD+L +A MFKRI +WRKYKGNPPS A++ G AAI+R+A
Sbjct: 1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKA 121
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.090e-49 Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
MSVTGK GVG+PII++HDAEG I T+E K GE YRG+LDE+EDNMN + DV T P GK +++ ++Y+RGSQI FV+VPD L K PMFKRI +WRKYKGNPPS + PRG AAAIIR+A
Sbjct: 1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRKA 121
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC) HSP 1 Score: 156 bits (394), Expect = 1.970e-44 Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRR 381
MSVTGK GVG+PIIL+HDAEG I T+ET+ GE+YRG+LDE+EDNMN+ ++DV TN GKE+++ +YI+GSQ+ F+I+PD+L KAPMFKRI +W+KY GN P A G RG AA I ++
Sbjct: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQK 119
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA) HSP 1 Score: 147 bits (372), Expect = 4.510e-41 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 19 TMSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
+MSVTGK G+G+PIILMHD EG I T+E K G++YRG LDE+EDNMN MKDV T+ GK++++ ++IRGSQILF + P +L KAPMFKR+ WRK++GN RG AAAIIR+A
Sbjct: 17 SMSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGNISKGEEA--RGQAAAIIRKA 136
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.060e-40 Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 52 MPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
MPIIL+HDAEG I T+E K GEV RG+LDE+ED+MN+ +KD V TN RGK + L+++YIRG+QI+F IVP++L APMF RI WRKYKG+PP A+ G +G AAIIR+A
Sbjct: 1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRKA 111
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U4H9R4_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4H9R4_9STRA) HSP 1 Score: 143 bits (361), Expect = 2.740e-39 Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA----------GPQPGRGVPAGGRPPPSA 438
MSVTGK G+G+P IL++DAEG + T+ETK G++YRG+L +SED MN+TM+ V + G E+ +Y+RG+Q+ VIVPD+L KAP F+R+ W++YKGNPPS T RG AAAIIR+ GP P G P G PP A
Sbjct: 1 MSVTGKRGIGVPGILLYDAEGTVVTVETKNGDLYRGLLTDSEDTMNLTMQQVHKRHADGTESTADLLYLRGNQVAMVIVPDMLCKAPAFQRVMRWKEYKGNPPSLGTTEARGQAAAIIRKTQEKRRSMGLGGPDPAGGPPRG---PPGA 146
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA) HSP 1 Score: 142 bits (359), Expect = 3.560e-39 Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFA-----ATGPRGAAAAIIRRA 384
M+VTGK GVG+P IL+HD EG +IE K GE+YRG L+E+EDNMN +K+ + T+ G + VY+RGSQILF++ PD+L APMFKR+ LW+K+KG PS GPRG AAAIIR+A
Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKA 126
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT) HSP 1 Score: 141 bits (355), Expect = 1.920e-38 Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDL----------LSKAPMFKRIALWRKYKGNPPSFAATG-----PRGAAAAIIRRA 384
M+VTGK GVG+P IL+HD EG I +IE K GE YRG+LDE+EDNMN MKD V T+ G +++ +VY+RGSQILF++ PD+ L APMFKR+ +W+K+KG+ P+ G PRG AAAIIR+A
Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRKA 136
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7R9YBR3_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR3_9STRA) HSP 1 Score: 142 bits (359), Expect = 3.700e-38 Identity = 71/133 (53.38%), Postives = 97/133 (72.93%), Query Frame = 1
Query: 22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA-GPQPGRGVPAG 417
MSVTGK G+G+P IL++DAEG I T+ETK G++YRG L ++ED MN+TM++V + G+EA VYIRG+Q+ ++VPD+L KAP F+R+ W++YKGNPPS RG AAAIIR+ + G GVP+G
Sbjct: 1 MSVTGKRGIGIPAILLYDAEGTIVTVETKLGDLYRGELTDTEDTMNLTMRNVQKKSAGGQEAHAEVVYIRGNQVAMIMVPDMLCKAPAFQRVTRWKEYKGNPPSLGTQEARGQAAAIIRKTQAKRRGMGVPSG 133
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI) HSP 1 Score: 141 bits (356), Expect = 3.770e-38 Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 1
Query: 52 MPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRAGPQPGRG 405
MPIIL+HDAEG I T+E K GEV RG+LDE+ED+MN+ +KD V TN RGK + L+++YIRG+QI+F IVP++L APMF RI RKYKG+PP A+ G +G AAIIR+A GRG
Sbjct: 1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRKAAMGGGRG 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8647.1.1 >prot_P-wetherbeei_contig8647.1.1 ID=prot_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKback to top mRNA from alignment at P-wetherbeei_contig8647:862..2033- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8647.1.1 ID=mRNA_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1172bp|location=Sequence derived from alignment at P-wetherbeei_contig8647:862..2033- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8647:862..2033- >mRNA_P-wetherbeei_contig8647.1.1 ID=mRNA_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig8647:862..2033- (Phaeothamnion wetherbeei SAG_119_79)back to top |