mRNA_P-wetherbeei_contig8647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8647.1.1
Unique NamemRNA_P-wetherbeei_contig8647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.480e-52
Identity = 81/121 (66.94%), Postives = 102/121 (84.30%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
            MSVTG +G+GMP+IL+HDAEGA+CT+E K GEVYRGILDE+EDNMNI MKD++ T+ RGK + L ++YIRGSQI+ VIVPD+L +A MFKRI +WRKYKGNPPS A++   G  AAI+R+A
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKA 121          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.090e-49
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
            MSVTGK GVG+PII++HDAEG I T+E K GE YRG+LDE+EDNMN  + DV  T P GK +++ ++Y+RGSQI FV+VPD L K PMFKRI +WRKYKGNPPS  +  PRG AAAIIR+A
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRKA 121          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 156 bits (394), Expect = 1.970e-44
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRR 381
            MSVTGK GVG+PIIL+HDAEG I T+ET+ GE+YRG+LDE+EDNMN+ ++DV  TN  GKE+++  +YI+GSQ+ F+I+PD+L KAPMFKRI +W+KY GN P   A G RG AA I ++
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQK 119          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.510e-41
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   19 TMSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
            +MSVTGK G+G+PIILMHD EG I T+E K G++YRG LDE+EDNMN  MKDV  T+  GK++++  ++IRGSQILF + P +L KAPMFKR+  WRK++GN         RG AAAIIR+A
Sbjct:   17 SMSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGNISKGEEA--RGQAAAIIRKA 136          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.060e-40
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 1
Query:   52 MPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA 384
            MPIIL+HDAEG I T+E K GEV RG+LDE+ED+MN+ +KD V TN RGK + L+++YIRG+QI+F IVP++L  APMF RI  WRKYKG+PP  A+ G +G  AAIIR+A
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRKA 111          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A6U4H9R4_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4H9R4_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.740e-39
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA----------GPQPGRGVPAGGRPPPSA 438
            MSVTGK G+G+P IL++DAEG + T+ETK G++YRG+L +SED MN+TM+ V   +  G E+    +Y+RG+Q+  VIVPD+L KAP F+R+  W++YKGNPPS   T  RG AAAIIR+           GP P  G P G   PP A
Sbjct:    1 MSVTGKRGIGVPGILLYDAEGTVVTVETKNGDLYRGLLTDSEDTMNLTMQQVHKRHADGTESTADLLYLRGNQVAMVIVPDMLCKAPAFQRVMRWKEYKGNPPSLGTTEARGQAAAIIRKTQEKRRSMGLGGPDPAGGPPRG---PPGA 146          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.560e-39
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFA-----ATGPRGAAAAIIRRA 384
            M+VTGK GVG+P IL+HD EG   +IE K GE+YRG L+E+EDNMN  +K+ + T+  G    +  VY+RGSQILF++ PD+L  APMFKR+ LW+K+KG  PS         GPRG AAAIIR+A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKA 126          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 141 bits (355), Expect = 1.920e-38
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDL----------LSKAPMFKRIALWRKYKGNPPSFAATG-----PRGAAAAIIRRA 384
            M+VTGK GVG+P IL+HD EG I +IE K GE YRG+LDE+EDNMN  MKD V T+  G  +++ +VY+RGSQILF++ PD+          L  APMFKR+ +W+K+KG+ P+    G     PRG AAAIIR+A
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRKA 136          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: A0A7R9YBR3_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.700e-38
Identity = 71/133 (53.38%), Postives = 97/133 (72.93%), Query Frame = 1
Query:   22 MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRA-GPQPGRGVPAG 417
            MSVTGK G+G+P IL++DAEG I T+ETK G++YRG L ++ED MN+TM++V   +  G+EA    VYIRG+Q+  ++VPD+L KAP F+R+  W++YKGNPPS      RG AAAIIR+    + G GVP+G
Sbjct:    1 MSVTGKRGIGIPAILLYDAEGTIVTVETKLGDLYRGELTDTEDTMNLTMRNVQKKSAGGQEAHAEVVYIRGNQVAMIMVPDMLCKAPAFQRVTRWKEYKGNPPSLGTQEARGQAAAIIRKTQAKRRGMGVPSG 133          
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.770e-38
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   52 MPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMKDVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKGNPPSFAATGPRGAAAAIIRRAGPQPGRG 405
            MPIIL+HDAEG I T+E K GEV RG+LDE+ED+MN+ +KD V TN RGK + L+++YIRG+QI+F IVP++L  APMF RI   RKYKG+PP  A+ G +G  AAIIR+A    GRG
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRKAAMGGGRG 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP5_9STRA3.480e-5266.94Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA3.090e-4965.29Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC1.970e-4460.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S3K1R1_9STRA4.510e-4158.20Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A6H5L429_9PHAE2.060e-4062.16Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A6U4H9R4_9STRA2.740e-3950.34Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA3.560e-3954.76Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
D0NPB0_PHYIT1.920e-3852.94Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]
A0A7R9YBR3_9STRA3.700e-3853.38Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
D7FT20_ECTSI3.770e-3860.17Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8647contigP-wetherbeei_contig8647:862..2033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI44658
PFAMsLSM
Model size847
Max annot lvl4776|Peronosporales
KEGG koko:K11088
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.29e-43
EggNOG OGsCOG1958@1|root,KOG3172@2759|Eukaryota,3QFXU@4776|Peronosporales
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D3
Ec32 orthologEc-04_002450.1
DescriptionLSM domain
Cds size657
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.8581703-UTR-P-wetherbeei_contig8647:861..10301683187051.8581703-UTR-P-wetherbeei_contig8647:861..1030Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8647 862..1030 -
1683187051.885212-UTR-P-wetherbeei_contig8647:2012..20331683187051.885212-UTR-P-wetherbeei_contig8647:2012..2033Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8647 2013..2033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.868552-CDS-P-wetherbeei_contig8647:1030..16861683187051.868552-CDS-P-wetherbeei_contig8647:1030..1686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8647 1031..1686 -
1683187051.8771439-CDS-P-wetherbeei_contig8647:2011..20121683187051.8771439-CDS-P-wetherbeei_contig8647:2011..2012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8647 2012..2012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8647.1.1prot_P-wetherbeei_contig8647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8647 1031..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8647.1.1

>prot_P-wetherbeei_contig8647.1.1 ID=prot_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp
MSVTGKSGVGMPIILMHDAEGAICTIETKGGEVYRGILDESEDNMNITMK
DVVVTNPRGKEARLRRVYIRGSQILFVIVPDLLSKAPMFKRIALWRKYKG
NPPSFAATGPRGAAAAIIRRAGPQPGRGVPAGGRPPPSAYGPGGGGGGSV
GGPSAYGPGGGGGRGGGGGFGGGGYGAGSGAGGYGGGVGRGSYGGGPPGG
GGGYGAGGGGGGGYGVRR*
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mRNA from alignment at P-wetherbeei_contig8647:862..2033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8647.1.1 ID=mRNA_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1172bp|location=Sequence derived from alignment at P-wetherbeei_contig8647:862..2033- (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGGCGGTTAGGGTACAAGTGAGTGGACTGACTTCTCCCAACACCA AGTGGTCTTGTTTTGTTTTGGCTCTCTCTTGACTACTGCAACCTGATCTT GTCCTCGTAGCTTTGACGATTTCTCGTCACTACCGCTTTCCTCTTTCAAT GTCTATAACTTTTGTCGTTTGACCACTTATTCGTTGCCCCGGTTATTACA GACTCTGCGCATTTCCGCTGGGGTCTGCGTTGGATGTAAACCATTGGCCT TTTTCTGACATCTTTTGGTAAACGTATAAATCGCCTGCGCCTGAGTAAAT TTCACTCCTTCTCTCTTCTCTTGTTTTTTTAAAACCGACACTGGCAGTGA GTGTCACGGGCAAGTCCGGGGTGGGCATGCCAATCATCCTCATGCACGAT GCAGAAGGCGCAATCTGCACCATTGAGACAAAGGGCGGCGAAGTGTATCG GGGTATTCTCGACGAGTCGGAAGACAACATGAACATCACCATGAAGGACG TTGTCGTGACCAACCCGCGCGGTAAGGAAGCCAGGTTGCGCCGCGTCTAC ATCCGTGGCAGCCAGATACTCTTCGTCATTGTGCCGGACCTGCTCTCCAA GGCGCCAATGTTCAAGCGGATCGCCCTCTGGCGAAAGTACAAGGGGAACC CGCCATCGTTCGCTGCCACAGGCCCTCGAGGCGCTGCGGCGGCAATCATT CGCCGGGCAGGGCCACAACCGGGTCGCGGGGTGCCAGCGGGGGGCAGGCC ACCACCGTCGGCATACGGACCTGGAGGAGGGGGCGGCGGCAGCGTTGGTG GTCCCTCGGCTTATGGTCCTGGAGGCGGCGGCGGTCGGGGGGGAGGCGGC GGCTTCGGCGGCGGTGGATACGGTGCTGGGAGCGGGGCCGGCGGGTACGG CGGTGGAGTAGGGCGGGGCAGTTACGGCGGCGGCCCGCCAGGAGGGGGGG GGGGCTACGGCGCCGGAGGAGGAGGAGGCGGCGGCTACGGCGTAAGACGG TAAGAGGTGTCAACTATTGCGGCATTTCTTCGAATGGTGGAGAGGAGAGT GCGTGTGTTCCCCCTTTTCCTTTCACTTTTCGTGTGATCAGCTGCACCAA GCAACCCCATCATCAGGCGAAGTGCTTTTTCGAGCCTCATATTGTCATAA AAGGTCTGGATTCTTGAGGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8647:862..2033-

>mRNA_P-wetherbeei_contig8647.1.1 ID=mRNA_P-wetherbeei_contig8647.1.1|Name=mRNA_P-wetherbeei_contig8647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig8647:862..2033- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGTCACGGGCAAGTCCGGGGTGGGCATGCCAATCATCCTCATGCA
CGATGCAGAAGGCGCAATCTGCACCATTGAGACAAAGGGCGGCGAAGTGT
ATCGGGGTATTCTCGACGAGTCGGAAGACAACATGAACATCACCATGAAG
GACGTTGTCGTGACCAACCCGCGCGGTAAGGAAGCCAGGTTGCGCCGCGT
CTACATCCGTGGCAGCCAGATACTCTTCGTCATTGTGCCGGACCTGCTCT
CCAAGGCGCCAATGTTCAAGCGGATCGCCCTCTGGCGAAAGTACAAGGGG
AACCCGCCATCGTTCGCTGCCACAGGCCCTCGAGGCGCTGCGGCGGCAAT
CATTCGCCGGGCAGGGCCACAACCGGGTCGCGGGGTGCCAGCGGGGGGCA
GGCCACCACCGTCGGCATACGGACCTGGAGGAGGGGGCGGCGGCAGCGTT
GGTGGTCCCTCGGCTTATGGTCCTGGAGGCGGCGGCGGTCGGGGGGGAGG
CGGCGGCTTCGGCGGCGGTGGATACGGTGCTGGGAGCGGGGCCGGCGGGT
ACGGCGGTGGAGTAGGGCGGGGCAGTTACGGCGGCGGCCCGCCAGGAGGG
GGGGGGGGCTACGGCGCCGGAGGAGGAGGAGGCGGCGGCTACGGCGTAAG
ACGGTAA
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