prot_P-wetherbeei_contig8511.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8511.2.1
Unique Nameprot_P-wetherbeei_contig8511.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length153
Homology
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.450e-13
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   42 IAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 118
            IAG +ADL   L +AR+ L     A    +  ++IVAYAQRISGTT+AP  W+PGMPMV F PPAP  E MR GAL+
Sbjct:   63 IAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALT 139          
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-12
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0
Query:   34 RLRAYARTIAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALSLASNAAGRAELE 130
            R R  A  ++    DL   L   + ++D A  A  +P+    +VAYAQRI GTTAAPP W+PGMPMV F PPAP  E +R+G+    +N   + +L+
Sbjct:   76 RARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYANGLKKVDLK 172          
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: H3H5Y2_PHYRM (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5Y2_PHYRM)

HSP 1 Score: 72.8 bits (177), Expect = 4.670e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0
Query:   38 YARTIAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 118
            YA  +  +  D+++VL   R +L  A    K  + P +IVAYA RI+GTT+AP +W+PG+PM  F PPAP E  MR+G LS
Sbjct:   96 YAAQLRRSQEDIANVLRKHRVVLQNAKHQSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGLPMFGFMPPAPQEHMMRAGVLS 176          
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A2D4CI38_PYTIN (Mediator of RNA polymerase II transcription subunit 4 (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI38_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 4.850e-12
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   24 AIEEPKDGGTRLRAYARTIAGTAADLSDVLAAAREMLDGAAGAEKHP-IVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 118
            AI+E +    R+  YA  +  +  D+S VL   R +LD AA   + P + P ++VAYA RI+GTTAA  +W PG PM  F PPAP E  MR+G LS
Sbjct:   97 AIDEKRQ---RVIRYAAQLRRSQEDISSVLRKHRRVLDQAAQQPQQPRLDPRDVVAYAHRIAGTTAADKNWRPGFPMFGFMPPAPQEHMMRAGVLS 189          
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A1Y2H202_9FUNG (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H202_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 6.540e-5
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 0
Query:   48 DLSDVLAAAREMLDG----AAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 118
            D  +VL A+ E LD     AA A    +   EIVAYA R+S  T+APP++ P  P   F PP P E +MR+G L+
Sbjct:  114 DAKEVLEASMEDLDEKRAVAAAARSSEVSVGEIVAYANRLSNYTSAPPNFNPSDPNHPFEPPYPREVSMRAGILN 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YUZ4_9STRA2.450e-1355.84Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK1.400e-1242.27Mediator of RNA polymerase II transcription subuni... [more]
H3H5Y2_PHYRM4.670e-1246.91PPM-type phosphatase domain-containing protein n=1... [more]
A0A2D4CI38_PYTIN4.850e-1245.83Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y2H202_9FUNG6.540e-544.00Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 48..138
e-value: 2.1E-9
score: 37.3
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 34..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8511contigP-wetherbeei_contig8511:2003..2778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8511.2.1mRNA_P-wetherbeei_contig8511.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8511 2003..2778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8511.2.1 ID=prot_P-wetherbeei_contig8511.2.1|Name=mRNA_P-wetherbeei_contig8511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
VDQARRTLGAANKQDSPAPIAPVAIEEPKDGGTRLRAYARTIAGTAADLS
DVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMV
NFRPPAPTEETMRSGALSLASNAAGRAELEARVTAAAAAAAAAAADAAAA
EAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4