mRNA_P-wetherbeei_contig8511.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8511.2.1
Unique NamemRNA_P-wetherbeei_contig8511.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.450e-13
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  124 IAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 354
            IAG +ADL   L +AR+ L     A    +  ++IVAYAQRISGTT+AP  W+PGMPMV F PPAP  E MR GAL+
Sbjct:   63 IAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALT 139
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BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-12
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  100 RLRAYARTIAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALSLASNAAGRAELE 390
            R R  A  ++    DL   L   + ++D A  A  +P+    +VAYAQRI GTTAAPP W+PGMPMV F PPAP  E +R+G+    +N   + +L+
Sbjct:   76 RARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYANGLKKVDLK 172
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BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: H3H5Y2_PHYRM (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5Y2_PHYRM)

HSP 1 Score: 72.8 bits (177), Expect = 4.670e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  112 YARTIAGTAADLSDVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 354
            YA  +  +  D+++VL   R +L  A    K  + P +IVAYA RI+GTT+AP +W+PG+PM  F PPAP E  MR+G LS
Sbjct:   96 YAAQLRRSQEDIANVLRKHRVVLQNAKHQSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGLPMFGFMPPAPQEHMMRAGVLS 176
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BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A2D4CI38_PYTIN (Mediator of RNA polymerase II transcription subunit 4 (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI38_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 4.850e-12
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   70 AIEEPKDGGTRLRAYARTIAGTAADLSDVLAAAREMLDGAAGAEKHP-IVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 354
            AI+E +    R+  YA  +  +  D+S VL   R +LD AA   + P + P ++VAYA RI+GTTAA  +W PG PM  F PPAP E  MR+G LS
Sbjct:   97 AIDEKRQ---RVIRYAAQLRRSQEDISSVLRKHRRVLDQAAQQPQQPRLDPRDVVAYAHRIAGTTAADKNWRPGFPMFGFMPPAPQEHMMRAGVLS 189
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BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Match: A0A1Y2H202_9FUNG (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H202_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 6.540e-5
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  142 DLSDVLAAAREMLDG----AAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMVNFRPPAPTEETMRSGALS 354
            D  +VL A+ E LD     AA A    +   EIVAYA R+S  T+APP++ P  P   F PP P E +MR+G L+
Sbjct:  114 DAKEVLEASMEDLDEKRAVAAAARSSEVSVGEIVAYANRLSNYTSAPPNFNPSDPNHPFEPPYPREVSMRAGILN 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8511.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YUZ4_9STRA2.450e-1355.84Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK1.400e-1242.27Mediator of RNA polymerase II transcription subuni... [more]
H3H5Y2_PHYRM4.670e-1246.91PPM-type phosphatase domain-containing protein n=1... [more]
A0A2D4CI38_PYTIN4.850e-1245.83Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y2H202_9FUNG6.540e-544.00Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8511contigP-wetherbeei_contig8511:2003..2778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra86070
PFAMsPP2C
Model size459
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.66e-13
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,3QEQZ@4776|Peronosporales
Ec32 ortholog descriptionMediator complex, subunit Med4
Ec32 orthologEc-01_001020.1
DescriptionProtein phosphatase 2C
Cds size459
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.360124-CDS-P-wetherbeei_contig8511:2002..20891683187044.360124-CDS-P-wetherbeei_contig8511:2002..2089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8511 2003..2089 +
1683187044.3723629-CDS-P-wetherbeei_contig8511:2174..23951683187044.3723629-CDS-P-wetherbeei_contig8511:2174..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8511 2175..2395 +
1683187044.3827744-CDS-P-wetherbeei_contig8511:2627..27781683187044.3827744-CDS-P-wetherbeei_contig8511:2627..2778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8511 2628..2778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8511.2.1prot_P-wetherbeei_contig8511.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8511 2003..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8511.2.1

>prot_P-wetherbeei_contig8511.2.1 ID=prot_P-wetherbeei_contig8511.2.1|Name=mRNA_P-wetherbeei_contig8511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
VDQARRTLGAANKQDSPAPIAPVAIEEPKDGGTRLRAYARTIAGTAADLS
DVLAAAREMLDGAAGAEKHPIVPAEIVAYAQRISGTTAAPPDWEPGMPMV
NFRPPAPTEETMRSGALSLASNAAGRAELEARVTAAAAAAAAAAADAAAA
EAA
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mRNA from alignment at P-wetherbeei_contig8511:2003..2778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8511.2.1 ID=mRNA_P-wetherbeei_contig8511.2.1|Name=mRNA_P-wetherbeei_contig8511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=776bp|location=Sequence derived from alignment at P-wetherbeei_contig8511:2003..2778+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGACCAGGCAAGACGAACGCTTGGGGCGGCCAACAAACAAGACTCACC
TGCTCCGATAGCGCCAGTGGCCATCGAGGAGCCGAAGGTAAGGGAACAAA
GGGATCAGAAAAGGGCACGCTCCCTGTTGCTTAAACTCAGAGCGTCTCCA
TGCTAACNNNNNNNNNNGGCAGGATGGCGGCACTCGCTTGCGCGCCTACG
CACGCACGATCGCCGGCACTGCGGCGGACTTGAGCGACGTCCTGGCGGCG
GCACGTGAGATGCTCGATGGGGCGGCAGGGGCCGAGAAGCACCCAATCGT
ACCGGCCGAGATCGTGGCGTACGCGCAAAGAATAAGCGGAACGACGGCAG
CGCCTCCAGATTGGGAGCCGGGCATGCCCATGGTCAATTTCAGGTGTGCC
GTGGGCATAGCAGCCCGGATGTAGCAATGCCAAACCGCTGCAAAAGCAAA
CTTGTCGCACTTTGAAGGCCATATAGGAATGTATGTTCACATTACGCCTG
CATTGCCGCGTGGGTTACCCGTGACCATGTTGAACCGTTGCATCTCCTGG
CTTGTTGTCTTGCGCTTTTGATCGGTTCCCGGTGGCGTGATGTTACCTTC
CTCCCTCTCTTGGCATTGATTGCAGGCCGCCGGCGCCGACTGAAGAGACT
ATGCGTTCCGGGGCGTTGTCGCTGGCCAGCAACGCCGCGGGACGCGCCGA
GCTCGAAGCACGCGTCACGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGG
CCGATGCGGCAGCGGCTGAGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8511:2003..2778+

>mRNA_P-wetherbeei_contig8511.2.1 ID=mRNA_P-wetherbeei_contig8511.2.1|Name=mRNA_P-wetherbeei_contig8511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig8511:2003..2778+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGACCAGGCAAGACGAACGCTTGGGGCGGCCAACAAACAAGACTCACC
TGCTCCGATAGCGCCAGTGGCCATCGAGGAGCCGAAGGATGGCGGCACTC
GCTTGCGCGCCTACGCACGCACGATCGCCGGCACTGCGGCGGACTTGAGC
GACGTCCTGGCGGCGGCACGTGAGATGCTCGATGGGGCGGCAGGGGCCGA
GAAGCACCCAATCGTACCGGCCGAGATCGTGGCGTACGCGCAAAGAATAA
GCGGAACGACGGCAGCGCCTCCAGATTGGGAGCCGGGCATGCCCATGGTC
AATTTCAGGCCGCCGGCGCCGACTGAAGAGACTATGCGTTCCGGGGCGTT
GTCGCTGGCCAGCAACGCCGCGGGACGCGCCGAGCTCGAAGCACGCGTCA
CGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCCGATGCGGCAGCGGCT
GAGGCGGCG
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