prot_P-wetherbeei_contig7927.4.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig7927.4.1
Unique Nameprot_P-wetherbeei_contig7927.4.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length102
Homology
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A6I3F1V7_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A6I3F1V7_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.660e-42
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0
Query:    4 DDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTNDMLGALGALPH 102
            D+FYRAHH DAVRWA ALVGSREV EELAQ++L A+  +LG +D PA YLRR VVNR  SWHRWH RER RI RA AGQ  SY++PTN+ML ALGALP+
Sbjct:   19 DEFYRAHHRDAVRWAIALVGSREVAEELAQDSLEALRPRLGGLDNPAGYLRRTVVNRCASWHRWHTRERRRITRATAGQPRSYSQPTNEMLDALGALPY 117          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A7X9Q0X9_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q0X9_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.760e-42
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    4 DDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTNDMLGALGALPH 102
            DDFYR H ADAVRWATAL+GS E+GEE+AQ+AL AV R+L ++D PA YLRR VVNRA SWHRWHIR   R  R+ AG+ TSYTEPTN+MLGAL ALP+
Sbjct:   21 DDFYRTHRADAVRWATALIGSPEIGEEIAQDALHAVGRRLPTLDNPAGYLRRTVVNRAASWHRWHIRSLRREVRSVAGRPTSYTEPTNEMLGALAALPY 119          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A3C2AY52_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AY52_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 2.100e-41
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 0
Query:    2 TIDDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTNDMLGALGALPH 102
            T DDFYRAHHADAVRWA ALVGS  V EELA ++L AV  +L S+D PAAYLRR VVNRA SWHRWH+RER R+ R  AGQ TSYT+PT+++L AL +LP+
Sbjct:   17 TFDDFYRAHHADAVRWAVALVGSLAVAEELAHDSLEAVRPRLTSLDNPAAYLRRVVVNRARSWHRWHVRERRRVLRVTAGQPTSYTQPTSEVLDALASLPY 117          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A7K1BBA5_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A7K1BBA5_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 1.600e-30
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0
Query:    4 DDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTNDMLGALGALPH 102
            D FYRA+   AVRWA ALVG R V EELA +AL AV  +L  +D P  YLRR+VVNR TSW R H RE+ RI RA AGQ T+Y+  T++ML AL +LPH
Sbjct:   19 DTFYRANRDAAVRWAVALVGDRAVAEELAHDALAAVGPRLAELDNPVGYLRRSVVNRGTSWLRSHAREQRRIHRATAGQPTTYSAETHEMLSALASLPH 117          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A7W0KY58_9ACTN (Sigma70_r2 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KY58_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-15
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 0
Query:    4 DDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQ 82
            D FYR+   DA RWA AL G  + GEE+AQE  L ++ +   ++ PAAYLR AVVN A SWHR   R  AR   A  G+
Sbjct:   18 DGFYRSAWRDAARWAAALTGEAQAGEEIAQEVFLRLAGRYDELENPAAYLRTAVVNAARSWHRSAARRSAREHLAVVGE 96          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A7W1Z9Y9_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1Z9Y9_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 2.110e-15
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 0
Query:    5 DFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTN---DMLGALGALPH 102
            DFYR    DA RWATALVG R  GEELAQ+A + +  +   +D P  YLRR VVN A   HR   R + R R  A  + +S    T    ++L AL  LPH
Sbjct:   37 DFYRQRWHDAARWATALVGDRARGEELAQDAFIRIQSRFALLDNPEGYLRRTVVNLARESHRSSARRKWRERTNADREESSADVATGIDPELLAALARLPH 137          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A7V8Z633_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8Z633_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 2.030e-11
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    4 DDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSR---KLGSIDQPAAYLRRAVVNRATSWHRWHIRERARIRRAAAGQATS 85
            D FYR+    AV  A AL GS  V E++AQE +LA  R   ++G+ DQP A++RR VVNRATS HR    E   +RR A+   T+
Sbjct:   27 DAFYRSEFPRAVALAYALTGSGAVAEDMAQETMLAAHRHWERIGAYDQPRAWVRRVVVNRATSLHRRRAAEWRAVRRLASRDTTT 111          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A1C5H3A5_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Micromonospora TaxID=1873 RepID=A0A1C5H3A5_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 6.770e-10
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:    5 DFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATS-WHRWHIRE--RARIRRAAAGQATSYTEPTNDMLGALGALP 101
            +F  A + D +R A  L GSR+  ++L Q+ALL V R   ++D+P AY+RRA+VN  TS W R  +RE   + +   A   AT      +++L AL  LP
Sbjct:    8 EFVEARYGDLLRTAYLLTGSRDTAQDLVQDALLKVMRHWRTVDEPMAYVRRAMVNERTSRWRRIGLRELLTSVVPDRAGPDATDVVAVRDELLAALDRLP 107          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: A0A5D0V5B1_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Micromonospora sp. MP36 TaxID=2604468 RepID=A0A5D0V5B1_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 3.570e-9
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:    5 DFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATS-WHRWHIRE--RARIRRAAAGQATSYTEPTNDMLGALGALP 101
            +F    +AD +R A  L GSR+  ++L  EALL V R    +++P AY+RRA+VN  TS W R  +RE   A +   AA  +T      +++L AL  LP
Sbjct:    8 EFVEVRYADLLRTAYLLTGSRDAAQDLVHEALLKVMRHWRRVEEPMAYVRRAMVNERTSRWRRLGLRELLTATVPDRAAPDSTDGLAIRDELLAALDRLP 107          
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Match: UPI001945121D (SigE family RNA polymerase sigma factor n=1 Tax=Asanoa siamensis TaxID=926357 RepID=UPI001945121D)

HSP 1 Score: 59.7 bits (143), Expect = 5.400e-9
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query:    2 TIDDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPAAYLRRAVVNRATSWHRWHIRER 72
            T D  Y AH+A  VR A   VGS    E++ Q+  +   R++  +D PAAYLR+AVV+R +SW R  + ER
Sbjct:    6 TFDAVYAAHYAPLVRLAYVTVGSLPAAEDVVQDVFVEWYRRIDRVDAPAAYLRKAVVSRCSSWVRRRVLER 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7927.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3F1V7_9ACTN1.660e-4270.71Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A7X9Q0X9_9ACTN1.760e-4270.71Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A3C2AY52_9ACTN2.100e-4168.32SigE family RNA polymerase sigma factor n=1 Tax=Ac... [more]
A0A7K1BBA5_9ACTN1.600e-3059.60Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A7W0KY58_9ACTN1.380e-1549.37Sigma70_r2 domain-containing protein (Fragment) n=... [more]
A0A7W1Z9Y9_9ACTN2.110e-1545.54Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7V8Z633_9ACTN2.030e-1147.06SigE family RNA polymerase sigma factor n=1 Tax=Ac... [more]
A0A1C5H3A5_9ACTN6.770e-1039.00RNA polymerase sigma-70 factor, sigma-E family n=2... [more]
A0A5D0V5B1_9ACTN3.570e-939.00SigE family RNA polymerase sigma factor n=1 Tax=Mi... [more]
UPI001945121D5.400e-943.66SigE family RNA polymerase sigma factor n=1 Tax=As... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1740.10coord: 2..91
e-value: 2.0E-9
score: 39.2
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 6..71
e-value: 2.3E-5
score: 24.1
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 4..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7927contigP-wetherbeei_contig7927:2634..2939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7927.4.1mRNA_P-wetherbeei_contig7927.4.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig7927 2604..2939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig7927.4.1 ID=prot_P-wetherbeei_contig7927.4.1|Name=mRNA_P-wetherbeei_contig7927.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MTIDDFYRAHHADAVRWATALVGSREVGEELAQEALLAVSRKLGSIDQPA
AYLRRAVVNRATSWHRWHIRERARIRRAAAGQATSYTEPTNDMLGALGAL
PH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR013325RNA_pol_sigma_r2