prot_P-wetherbeei_contig790.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig790.5.1
Unique Nameprot_P-wetherbeei_contig790.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length217
Homology
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.220e-19
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0
Query:  100 WSEEGMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            WS    SR+RRA E AAAH  GR   L WR ++  E    C ARAKR+++RAIHACP ++ LWLDA R   LR  F  AE +DL++V+ EK
Sbjct: 1635 WSAAEQSRLRRAFEGAAAHASGRRLALPWRLHMAFERAARCHARAKRLHIRAIHACPGARALWLDAARRGALRGVFRAAELSDLVDVMAEK 1725          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2P6VEU4_9CHLO (NRDE2-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEU4_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.720e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  108 VRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGV 192
            V  ALERA  HP GR+ PLLWRCYL+ E  RG     +RV++RAI ACPWSK LW D   +A+L       E ++ +EV+ +KG+
Sbjct: 1228 VAAALERAVTHPAGRHTPLLWRCYLRFEGYRGRHEAVRRVFLRAIGACPWSKGLWCDG--LALLNGHVPPKELSEYLEVMKDKGI 1310          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A0A9HJF9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9HJF9_ARUDO)

HSP 1 Score: 75.1 bits (183), Expect = 1.850e-13
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 0
Query:  100 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            W++ G  +R+    ERA A  + +   LLWRCYL  E    C A A +RV+ RAIH+CPWSKRLWLD  +   L     + E +DL EV+ EK
Sbjct:   52 WNKAGSDNRIHSLFERALADDKLKKSVLLWRCYLAYEAEIACNASAARRVFFRAIHSCPWSKRLWLDGFQK--LSSILTLKELSDLQEVMREK 142          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A8J9S1M7_9CHLO (Probable nuclear exosome regulator NRDE2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S1M7_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 3.040e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  104 GMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGV 192
            G  RV+   ERA +  + + C LLWR Y+  E+ R C   A+RV++RAIHACPWSK LW+D   +  L       E ++L+EV+ EK V
Sbjct: 1186 GAHRVQALFERALSAKQMQQCALLWRAYMGYELSRDCPEAARRVFLRAIHACPWSKALWMDG--LVSLGDVVSARERSELLEVVREKDV 1272          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: K3YPF1_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YPF1_SETIT)

HSP 1 Score: 77.8 bits (190), Expect = 5.500e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 0
Query:  100 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            WS+ G  +R+    ERA A  + +   LLWRCYL  E  + C A A +RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct: 1041 WSKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEKACNASAARRVFFRAIHACPWSKRLWLDGFQK--LSSILTLKELSDLQEVMRDK 1131          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: UPI0019D5ED61 (LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5ED61)

HSP 1 Score: 77.0 bits (188), Expect = 9.650e-13
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0
Query:  100 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            W++ G  +R+    ERA A  + +   LLWRCYL  E  + C A A +RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct:  762 WNKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEKACNASAARRVFFRAIHACPWSKRLWLDGFQK--LSSVLTLKELSDLQEVMRDK 852          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2P6TS19_CHLSO (NRDE2-like protein isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS19_CHLSO)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-12
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  108 VRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            V+  LERA +H  GR+CPLLWR YL+ E  RG     +R+++RAI ACPW+K LW D   +A+L       E ++ +EV+ +K
Sbjct: 1159 VQSVLERAVSHDSGRHCPLLWRLYLRFEAHRGRHDAVRRLFLRAIGACPWAKALWCDG--LALLNGRAPPKELSEYIEVMKDK 1239          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2Z7C0W4_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C0W4_9LAMI)

HSP 1 Score: 76.6 bits (187), Expect = 1.370e-12
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 0
Query:  107 RVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            R+R   ERA    + +   +LWRCYL+ E+   C FA AKRV+ RAIHACPWSK+LWLD      L     V E +DL EV+ +K
Sbjct: 1063 RIRGLFERALEDGKLQNLVILWRCYLEYEMNIACNFAAAKRVFFRAIHACPWSKKLWLDG--FLKLDSILTVKELSDLQEVMRDK 1145          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: B4FYL0_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B4FYL0_MAIZE)

HSP 1 Score: 72.4 bits (176), Expect = 1.440e-12
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  100 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 190
            W + G  +R+    ERA A  + +   LLWRCYL  E    C  + A+RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct:   39 WGKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEIVCNSSAARRVFFRAIHACPWSKRLWLDGFQK--LGSVLTLKELSDLQEVMRDK 129          
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A453PP40_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PP40_AEGTS)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-12
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 0
Query:  100 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVL 187
            WS+ G  +R+    ERA A  + +   LLWRCYL  E    C  + A+RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+
Sbjct:   95 WSKAGSYNRIHSLFERALADDKLQKSVLLWRCYLAYEAEIACNTSAARRVFFRAIHACPWSKRLWLDGFQK--LSSVLTMKELSDLQEVM 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIY3_9STRA6.220e-1951.65NRDE-2, necessary for RNA interference-domain-cont... [more]
A0A2P6VEU4_9CHLO1.720e-1549.41NRDE2-like protein n=1 Tax=Micractinium conductrix... [more]
A0A0A9HJF9_ARUDO1.850e-1345.16Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A8J9S1M7_9CHLO3.040e-1343.82Probable nuclear exosome regulator NRDE2 n=1 Tax=C... [more]
K3YPF1_SETIT5.500e-1346.24Uncharacterized protein n=14 Tax=Paniceae TaxID=14... [more]
UPI0019D5ED619.650e-1345.16LOW QUALITY PROTEIN: nuclear exosome regulator NRD... [more]
A0A2P6TS19_CHLSO1.060e-1244.58NRDE2-like protein isoform X2 n=1 Tax=Chlorella so... [more]
A0A2Z7C0W4_9LAMI1.370e-1248.24Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
B4FYL0_MAIZE1.440e-1244.09Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A453PP40_AEGTS1.650e-1245.56Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 103..137
e-value: 1.1
score: 18.3
coord: 139..171
e-value: 3.9
score: 16.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 87..197
e-value: 2.5E-7
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..216
IPR013633siRNA-mediated silencing protein NRDE-2PANTHERPTHR13471TETRATRICOPEPTIDE-LIKE HELICALcoord: 79..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig790contigP-wetherbeei_contig790:5403..6053 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig790.5.1mRNA_P-wetherbeei_contig790.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig790 5390..6177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig790.5.1 ID=prot_P-wetherbeei_contig790.5.1|Name=mRNA_P-wetherbeei_contig790.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
MRVAQHVSAVASRRARAWAAPGPTTLEWLFHVLVQMWACEDDVATATAHL
TTGLLPVVADIAGAATDAVAAAKGPAAGTAAATPAVAAATAAEATGVRRW
SEEGMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMR
AIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGVGAVNEPPP
FHGDEKGGRAGDGMED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR013633NRDE-2