prot_P-wetherbeei_contig790.4.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig790.4.1
Unique Nameprot_P-wetherbeei_contig790.4.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length292
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig790.4.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.170e-7
Identity = 61/176 (34.66%), Postives = 73/176 (41.48%), Query Frame = 0 
Query:    1 LEAGLPLSAAEEV-----------------GEGGCPAVLAPGPAGAAARQAALHMLVCMAEGKYVKPKGAGGGRSKAGGSAGGAAVSPMQ------------------LLHARMLLADHVRREATALGAAPGVVTG--ALDCTPALFYYAAAFAWLQALSMGLSEAQEAIRETVQQ 139
            L AGLPLSAA                      GGC A L       AAR AALH+L+ MAEG Y KP                AA + +Q                  L+ AR L A+H+ REA AL +A         LD TP  FYYAAA  WLQ  + G   A  A++  + Q
Sbjct: 1280 LTAGLPLSAAXXXXXXXXXXXTPQAPAGSNASGGCVAELCSPTGSGAARDAALHLLLSMAEGSYEKPPAV-------------AAAAALQXXXXXXXXXXXXXXXXXRLVRARRLFAEHLTREAEALRSAXXXXXXXXGLDATPPFFYYAAALTWLQLATDGALAAAAAMQSALLQ 1442
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig790.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZIY3_9STRA1.170e-734.66NRDE-2, necessary for RNA interference-domain-cont... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig790contigP-wetherbeei_contig790:4512..5387 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig790.4.1mRNA_P-wetherbeei_contig790.4.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig790 4512..5389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig790.4.1 ID=prot_P-wetherbeei_contig790.4.1|Name=mRNA_P-wetherbeei_contig790.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
LEAGLPLSAAEEVGEGGCPAVLAPGPAGAAARQAALHMLVCMAEGKYVKP
KGAGGGRSKAGGSAGGAAVSPMQLLHARMLLADHVRREATALGAAPGVVT
GALDCTPALFYYAAAFAWLQALSMGLSEAQEAIRETVQQWPAPVVHGTEE
SVLDMPRPAGGGSADGATLAAGAAIAPGGGDGSGSGGGGGGDDEAAKAKE
EASASSLVAWGNDDGWRMAATEGAAAVGLERFHGAACELLYIATKHGRQK
SGGGGLSGCQGSPAPLRAALRRALRDFPLSPALLAVLVANEQ
back to top