prot_P-wetherbeei_contig7433.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig7433.1.1
Unique Nameprot_P-wetherbeei_contig7433.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length275
Homology
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.850e-83
Identity = 132/273 (48.35%), Postives = 188/273 (68.86%), Query Frame = 0
Query:    3 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTG-MKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 274
            GPV A+ Q+ R+V  AA A +++L W+ ++ SL P+G +EA+ ++V++++V+    TFL +GD+ +SVQ L+WR+ED  +  + +DYE  + Y++  LV  P+LG+V  D   N+K+L+Y P    +RGG++L+C ADF++G+ V A  P+    N+L   R    +G LDGS+ +L P++ER FRRLYALQG+M NALEH A  NPRGARLF      AAA   G MKG+LDG +LWRF  L A+VQ ELTRAIGTTVD VL +LL++D  A
Sbjct:    4 GPVGAVAQISRYVATAAAASITILEWDPKSDSLRPVGIYEASQYVVTMSVVK----TFLVLGDVMNSVQFLMWRDEDRSINQLAKDYEPTQVYATVFLVDQPSLGIVVGDSSGNIKILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPRGARLFRSQLPAAAAAEGGRMKGVLDGALLWRFVSLPAQVQCELTRAIGTTVDAVLLSLLDVDAQA 272          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.770e-78
Identity = 133/248 (53.63%), Postives = 169/248 (68.15%), Query Frame = 0
Query:   28 WNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAE-PGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 274
            W+ +  +L  IGF +   +++S++++   +H F+ VGD Y SVQL+VWREEDH L  + +D+E  + +S+  L+  P + +V  D  RN+KVLQY P A  +RGG KLLCQ+DF LGS V  L  R    N     R  LL GTLDG LG +LPVDERVFRRLYALQGIMSNAL H  AANPR  RLF   P FR   ++     MLDG++LWRF GLDA+ Q +LTRAIGTTVD V+ANLL+IDLA+
Sbjct:   13 WDPKTCTLELIGFHDPRVYVMSLSVI---KHKFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSAEYLIDEPGMAIVVADGRRNVKVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTFRYETKQN----MLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLAS 253          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 201 bits (512), Expect = 6.060e-59
Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 0
Query:    3 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 272
            GP +AI QLG H+++AAG  + V  ++A+ + L PI F++A  ++VS+ +V+    T +AV D YHSV LL W E D  H L+++G+DY    +A+   S  +V  P+LG++  D   NL++LQY PA  E+RGGN+L+ +ADF+L   ++ L       +PRP    R G R   ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H  A NPRG RL    G+ A  R+   KG LDG +LWRF GL    Q +L  AIGT+ + VL +LLE+D+
Sbjct:  121 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 390          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.000e-55
Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 0
Query:    3 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 272
            GP +AI QLG H+++AAG  + V  ++A+ + L PI F++A  ++VS+ +V+    T +AV D YHSV LL W E D  H L+++G+DY    +A+   S  +V  P+LG++  D   NL++LQY PA  E+RGGN+L+ +ADF+L   ++ L       +PRP    R G R   ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H  A NPRG RL    G+ A  R+   KG LDG +LWRF GL    Q +L  AIGT+ + VL +LLE+D+
Sbjct: 1677 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 1946          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.330e-49
Identity = 116/302 (38.41%), Postives = 159/302 (52.65%), Query Frame = 0
Query:    3 GPVSAIRQLGR----HVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------------PAPPNRLGRRRSALLL--------------GTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARR-TGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 273
            GPV+ +  L       +++ AGA ++V  W  + Q L  IGFF A   +  V + +    TF+ + D Y S+  LVWRE D  L ++ +DYE    Y++G +   P +  V  D   NL+  QY P    +RGGNKL+C+AD++LG+  T L               PA      R R A+ L              GT+DG  G + PV+ER FRRLYALQG++ NAL+ + A N RG RLF     R A R     KG+LDG +L R+  L    Q E+ RAIGTTVD ++ NLLE+D A
Sbjct:  245 GPVTVLEGLKTGNQTRLVIGAGAEVTVEQW--KDQQLTQIGFFHAQMQVQGVTMFK----TFMLLSDAYDSIHFLVWRESDKSLTLLAKDYEPTCVYAAGFINRGPTMYFVCHDDRENLQFFQYAPTDPASRGGNKLVCRADYHLGTQTTHLRTHLVRNSLLLGSATPATSWIALRHRDAMALRQEDPDCRRFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVRGWRLFQRTTQRGACRSGERQKGVLDGGLLMRYCQLGYFQQEEIARAIGTTVDMIMDNLLELDCA 540          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.710e-47
Identity = 109/282 (38.65%), Postives = 161/282 (57.09%), Query Frame = 0
Query:    2 RGPVSAIRQLGRHVLVAAG-------ARMSVLHWNAQ-----AQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEID 271
            +G VSA+ QL  HV V  G       AR+ V  W          SL  IGFF+    +VS+ +V++    ++ +GD+ HS+Q + WRE+D  L+++ +D    +     +++  PA+ ++  D  RNL+V Q+ P  +++   N+L   A+F++G+ +T+ +           +R A    +LDG+ G ++PVDE  FRRLYALQGI+ NAL HTAA NPR  RL        A R+   K +LDG +LWRF  LDAR Q  LT AIGTTV+ VL+ L +ID
Sbjct:  183 KGIVSALSQLQAHVAVCEGPNEANACARLEVYAWRMDQGPGLTGSLRLIGFFDQLVLVVSIKVVKN----YVLLGDLRHSIQWVNWREKDSNLQILAKDATCCDVLGCEIVIDAPAIAMLVADDLRNLRVFQFRPDLSKS---NRLQHAAEFHVGAPITSFVRHKVWSASQKLQRFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPRAFRLARRHLTDIAPRQ---KKILDGALLWRFVSLDAREQARLTCAIGTTVENVLSALRDID 454          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A2D4CF34_PYTIN (CPSF_A domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF34_PYTIN)

HSP 1 Score: 166 bits (421), Expect = 1.210e-45
Identity = 102/289 (35.29%), Postives = 156/289 (53.98%), Query Frame = 0
Query:    3 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------PAPPNRLGRRRS---------ALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 270
            G +S + QLG HVL A G ++ V  +  ++  L    F++A  +IVS+++++     ++   D+Y SV  L WRE+  QL+++ +DYE     ++   V+   L ++  D   NL V+Q+ P   E+RGG +LL  +DF+LG  +T+++ +      P      G R+            LLG+ +GS+G ++ V ERVFRRL+ LQ +M N L    A NPR  R+    G R   R      +   KG LDG VL+RF  LD   Q EL R IGTT + ++ NLLE+
Sbjct:   85 GAISFVSQLGPHVLAAVGMKLIVYEF--KSDQLTACAFYDAQMYIVSLSVIKD----YVMYADVYKSVHFLRWREKQRQLQLLAKDYEPLAITATEFSVAEKKLALLAGDMEENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQITSMIRKATGTSNPPAAQMAGHRKHQEQPSQSQYVTLLGSSEGSVGAIMAVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGGRRTGRPDAWCKQKWKKGFLDGHVLFRFLHLDYVAQKELARCIGTTPEVIIHNLLEV 367          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A8K1CL86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL86_PYTOL)

HSP 1 Score: 172 bits (437), Expect = 4.250e-45
Identity = 105/293 (35.84%), Postives = 160/293 (54.61%), Query Frame = 0
Query:    2 RGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR-----PAPPNRLGRRRSA----------LLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 273
            +G +S + QLG +V+ A G +M V  +  ++  LI   F++A  +IVS+++V+     ++  GD+Y SV  L W+E+  QL+++ +DYE     S+   +    L ++ TD   NL V+QY P   E+RGG +LL  +DF+LG  +T++  +     P PP    +R+             +LGT +GS+  ++PV ERVFRRL+ LQ +M N L    A NPR  R+    G R   R      +   KG LD  VL+RF  LD   Q E+ R IGTT + ++ NLLE+  A
Sbjct: 1483 QGAISCVAQLGPYVVAAVGMKMIVYEY--KSDQLIGCAFYDAQMYIVSISVVKD----YVMYGDVYKSVHFLRWKEKQRQLQLLAKDYEPLAVTSTEFNLFERRLALLATDMEENLHVMQYAPQDIESRGGQRLLRTSDFHLGMQITSMFRKQVGVAPPPPRPAHQRQPVQQPSGQNVYVTVLGTSEGSVSAVIPVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGRRRTGRPDAWSKQKWKKGFLDAHVLFRFLHLDYVAQKEIARCIGTTPEVIIHNLLEVQRA 1769          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.600e-44
Identity = 106/282 (37.59%), Postives = 158/282 (56.03%), Query Frame = 0
Query:    1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 270
            ++G +S + QLG +VL A G+++ V  +  +   L+   FF+A  +IVS+ +++S    F+  GD+Y S+ LL W+ ++  + M+ +DYE     ++ + V    LG++ +D   N+ V+QY P   E+RGG +LL  +DF++G+ VT+L+ +    + +       LL T +G LG+L+PV ER+FRRLY LQ IM NAL   A  NPR         FR A   R TG           K  LD  V+ RF  LD   Q EL R IGTT + VL NLLE+
Sbjct: 1216 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----FIVYGDLYKSIHLLYWKPQEKTIIMLAKDYEPLSITTTEVSVMGTQLGLIASDMQANIHVMQYEPTHVESRGGQRLLRTSDFHVGARVTSLMRKRVLESPIPLY--VTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVLHNLLEL 1481          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.430e-42
Identity = 105/282 (37.23%), Postives = 156/282 (55.32%), Query Frame = 0
Query:    1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 270
            ++G +S + QLG +VL A G+++ V  +  +   L+   FF+A  +IVS+ +++S    ++  GD+Y SV  L+W+ ++  + M+ +DYE     ++ + V    LG++  D   N+ VLQY P   E+RGG +LL  +DF++G+ VT+LL +    +         LL T +G +G+L+PV ER+FRRLY LQ IM NAL   A  NPR         FR A   R TG           K  LD  V+ RF  LD   Q EL R IGTT + V+ NLLE+
Sbjct: 1211 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----YILYGDLYKSVHFLLWKPQEKTIIMLAKDYEPLSLTTTEVSVMDTQLGLIACDMQSNVHVLQYEPTHVESRGGQRLLRTSDFHVGARVTSLLRKRVVESPFPFY--VTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVMHNLLEL 1476          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z873_9STRA4.850e-8348.35Cleavage/polyadenylation specificity factor, A sub... [more]
D7G8W9_ECTSI1.770e-7853.63CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
K8YVP3_NANGC6.060e-5943.62Cleavage and polyadenylation specificity factor su... [more]
A0A4D9CM95_9STRA4.000e-5543.62Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BI36_9STRA1.330e-4938.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2D575_9STRA1.710e-4738.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4CF34_PYTIN1.210e-4535.29CPSF_A domain-containing protein n=1 Tax=Pythium i... [more]
A0A8K1CL86_PYTOL4.250e-4535.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WGC0_9STRA6.600e-4437.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L0M5_9STRA1.430e-4237.23Aste57867_14310 protein n=1 Tax=Aphanomyces stella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 2..241
e-value: 4.2E-41
score: 141.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..180
e-value: 1.4E-34
score: 121.9
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 2..265
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 2..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7433contigP-wetherbeei_contig7433:133..1741 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7433.1.1mRNA_P-wetherbeei_contig7433.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig7433 133..1741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig7433.1.1 ID=prot_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSV
ALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLL
VSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL
LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNA
LEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQT
ELTRAIGTTVDTVLANLLEIDLAAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
IPR015943WD40/YVTN_repeat-like_dom_sf