mRNA_P-wetherbeei_contig7433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA) HSP 1 Score: 259 bits (662), Expect = 4.850e-83 Identity = 132/273 (48.35%), Postives = 188/273 (68.86%), Query Frame = 1
Query: 7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTG-MKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 822
GPV A+ Q+ R+V AA A +++L W+ ++ SL P+G +EA+ ++V++++V+ TFL +GD+ +SVQ L+WR+ED + + +DYE + Y++ LV P+LG+V D N+K+L+Y P +RGG++L+C ADF++G+ V A P+ N+L R +G LDGS+ +L P++ER FRRLYALQG+M NALEH A NPRGARLF AAA G MKG+LDG +LWRF L A+VQ ELTRAIGTTVD VL +LL++D A
Sbjct: 4 GPVGAVAQISRYVATAAAASITILEWDPKSDSLRPVGIYEASQYVVTMSVVK----TFLVLGDVMNSVQFLMWRDEDRSINQLAKDYEPTQVYATVFLVDQPSLGIVVGDSSGNIKILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPRGARLFRSQLPAAAAAEGGRMKGVLDGALLWRFVSLPAQVQCELTRAIGTTVDAVLLSLLDVDAQA 272
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.770e-78 Identity = 133/248 (53.63%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 82 WNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAE-PGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 822
W+ + +L IGF + +++S++++ +H F+ VGD Y SVQL+VWREEDH L + +D+E + +S+ L+ P + +V D RN+KVLQY P A +RGG KLLCQ+DF LGS V L R N R LL GTLDG LG +LPVDERVFRRLYALQGIMSNAL H AANPR RLF P FR ++ MLDG++LWRF GLDA+ Q +LTRAIGTTVD V+ANLL+IDLA+
Sbjct: 13 WDPKTCTLELIGFHDPRVYVMSLSVI---KHKFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSAEYLIDEPGMAIVVADGRRNVKVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTFRYETKQN----MLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLAS 253
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC) HSP 1 Score: 201 bits (512), Expect = 6.060e-59 Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 1
Query: 7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 816
GP +AI QLG H+++AAG + V ++A+ + L PI F++A ++VS+ +V+ T +AV D YHSV LL W E D H L+++G+DY +A+ S +V P+LG++ D NL++LQY PA E+RGGN+L+ +ADF+L ++ L +PRP R G R ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H A NPRG RL G+ A R+ KG LDG +LWRF GL Q +L AIGT+ + VL +LLE+D+
Sbjct: 121 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 390
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA) HSP 1 Score: 201 bits (512), Expect = 4.000e-55 Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 1
Query: 7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 816
GP +AI QLG H+++AAG + V ++A+ + L PI F++A ++VS+ +V+ T +AV D YHSV LL W E D H L+++G+DY +A+ S +V P+LG++ D NL++LQY PA E+RGGN+L+ +ADF+L ++ L +PRP R G R ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H A NPRG RL G+ A R+ KG LDG +LWRF GL Q +L AIGT+ + VL +LLE+D+
Sbjct: 1677 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 1946
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.330e-49 Identity = 116/302 (38.41%), Postives = 159/302 (52.65%), Query Frame = 1
Query: 7 GPVSAIRQLGR----HVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------------PAPPNRLGRRRSALLL--------------GTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARR-TGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 819
GPV+ + L +++ AGA ++V W + Q L IGFF A + V + + TF+ + D Y S+ LVWRE D L ++ +DYE Y++G + P + V D NL+ QY P +RGGNKL+C+AD++LG+ T L PA R R A+ L GT+DG G + PV+ER FRRLYALQG++ NAL+ + A N RG RLF R A R KG+LDG +L R+ L Q E+ RAIGTTVD ++ NLLE+D A
Sbjct: 245 GPVTVLEGLKTGNQTRLVIGAGAEVTVEQW--KDQQLTQIGFFHAQMQVQGVTMFK----TFMLLSDAYDSIHFLVWRESDKSLTLLAKDYEPTCVYAAGFINRGPTMYFVCHDDRENLQFFQYAPTDPASRGGNKLVCRADYHLGTQTTHLRTHLVRNSLLLGSATPATSWIALRHRDAMALRQEDPDCRRFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVRGWRLFQRTTQRGACRSGERQKGVLDGGLLMRYCQLGYFQQEEIARAIGTTVDMIMDNLLELDCA 540
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.710e-47 Identity = 109/282 (38.65%), Postives = 161/282 (57.09%), Query Frame = 1
Query: 4 RGPVSAIRQLGRHVLVAAG-------ARMSVLHWNAQ-----AQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEID 813
+G VSA+ QL HV V G AR+ V W SL IGFF+ +VS+ +V++ ++ +GD+ HS+Q + WRE+D L+++ +D + +++ PA+ ++ D RNL+V Q+ P +++ N+L A+F++G+ +T+ + +R A +LDG+ G ++PVDE FRRLYALQGI+ NAL HTAA NPR RL A R+ K +LDG +LWRF LDAR Q LT AIGTTV+ VL+ L +ID
Sbjct: 183 KGIVSALSQLQAHVAVCEGPNEANACARLEVYAWRMDQGPGLTGSLRLIGFFDQLVLVVSIKVVKN----YVLLGDLRHSIQWVNWREKDSNLQILAKDATCCDVLGCEIVIDAPAIAMLVADDLRNLRVFQFRPDLSKS---NRLQHAAEFHVGAPITSFVRHKVWSASQKLQRFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPRAFRLARRHLTDIAPRQ---KKILDGALLWRFVSLDAREQARLTCAIGTTVENVLSALRDID 454
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A2D4CF34_PYTIN (CPSF_A domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF34_PYTIN) HSP 1 Score: 166 bits (421), Expect = 1.210e-45 Identity = 102/289 (35.29%), Postives = 156/289 (53.98%), Query Frame = 1
Query: 7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------PAPPNRLGRRRS---------ALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
G +S + QLG HVL A G ++ V + ++ L F++A +IVS+++++ ++ D+Y SV L WRE+ QL+++ +DYE ++ V+ L ++ D NL V+Q+ P E+RGG +LL +DF+LG +T+++ + P G R+ LLG+ +GS+G ++ V ERVFRRL+ LQ +M N L A NPR R+ G R R + KG LDG VL+RF LD Q EL R IGTT + ++ NLLE+
Sbjct: 85 GAISFVSQLGPHVLAAVGMKLIVYEF--KSDQLTACAFYDAQMYIVSLSVIKD----YVMYADVYKSVHFLRWREKQRQLQLLAKDYEPLAITATEFSVAEKKLALLAGDMEENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQITSMIRKATGTSNPPAAQMAGHRKHQEQPSQSQYVTLLGSSEGSVGAIMAVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGGRRTGRPDAWCKQKWKKGFLDGHVLFRFLHLDYVAQKELARCIGTTPEVIIHNLLEV 367
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A8K1CL86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL86_PYTOL) HSP 1 Score: 172 bits (437), Expect = 4.250e-45 Identity = 105/293 (35.84%), Postives = 160/293 (54.61%), Query Frame = 1
Query: 4 RGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR-----PAPPNRLGRRRSA----------LLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 819
+G +S + QLG +V+ A G +M V + ++ LI F++A +IVS+++V+ ++ GD+Y SV L W+E+ QL+++ +DYE S+ + L ++ TD NL V+QY P E+RGG +LL +DF+LG +T++ + P PP +R+ +LGT +GS+ ++PV ERVFRRL+ LQ +M N L A NPR R+ G R R + KG LD VL+RF LD Q E+ R IGTT + ++ NLLE+ A
Sbjct: 1483 QGAISCVAQLGPYVVAAVGMKMIVYEY--KSDQLIGCAFYDAQMYIVSISVVKD----YVMYGDVYKSVHFLRWKEKQRQLQLLAKDYEPLAVTSTEFNLFERRLALLATDMEENLHVMQYAPQDIESRGGQRLLRTSDFHLGMQITSMFRKQVGVAPPPPRPAHQRQPVQQPSGQNVYVTVLGTSEGSVSAVIPVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGRRRTGRPDAWSKQKWKKGFLDAHVLFRFLHLDYVAQKEIARCIGTTPEVIIHNLLEVQRA 1769
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA) HSP 1 Score: 169 bits (428), Expect = 6.600e-44 Identity = 106/282 (37.59%), Postives = 158/282 (56.03%), Query Frame = 1
Query: 1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
++G +S + QLG +VL A G+++ V + + L+ FF+A +IVS+ +++S F+ GD+Y S+ LL W+ ++ + M+ +DYE ++ + V LG++ +D N+ V+QY P E+RGG +LL +DF++G+ VT+L+ + + + LL T +G LG+L+PV ER+FRRLY LQ IM NAL A NPR FR A R TG K LD V+ RF LD Q EL R IGTT + VL NLLE+
Sbjct: 1216 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----FIVYGDLYKSIHLLYWKPQEKTIIMLAKDYEPLSITTTEVSVMGTQLGLIASDMQANIHVMQYEPTHVESRGGQRLLRTSDFHVGARVTSLMRKRVLESPIPLY--VTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVLHNLLEL 1481
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.430e-42 Identity = 105/282 (37.23%), Postives = 156/282 (55.32%), Query Frame = 1
Query: 1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
++G +S + QLG +VL A G+++ V + + L+ FF+A +IVS+ +++S ++ GD+Y SV L+W+ ++ + M+ +DYE ++ + V LG++ D N+ VLQY P E+RGG +LL +DF++G+ VT+LL + + LL T +G +G+L+PV ER+FRRLY LQ IM NAL A NPR FR A R TG K LD V+ RF LD Q EL R IGTT + V+ NLLE+
Sbjct: 1211 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----YILYGDLYKSVHFLLWKPQEKTIIMLAKDYEPLSLTTTEVSVMDTQLGLIACDMQSNVHVLQYEPTHVESRGGQRLLRTSDFHVGARVTSLLRKRVVESPFPFY--VTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVMHNLLEL 1476 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7433.1.1 >prot_P-wetherbeei_contig7433.1.1 ID=prot_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVback to top mRNA from alignment at P-wetherbeei_contig7433:133..1741+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7433.1.1 ID=mRNA_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1609bp|location=Sequence derived from alignment at P-wetherbeei_contig7433:133..1741+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7433:133..1741+ >mRNA_P-wetherbeei_contig7433.1.1 ID=mRNA_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig7433:133..1741+ (Phaeothamnion wetherbeei SAG_119_79)back to top |