mRNA_P-wetherbeei_contig7433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7433.1.1
Unique NamemRNA_P-wetherbeei_contig7433.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.850e-83
Identity = 132/273 (48.35%), Postives = 188/273 (68.86%), Query Frame = 1
Query:    7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTG-MKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 822
            GPV A+ Q+ R+V  AA A +++L W+ ++ SL P+G +EA+ ++V++++V+    TFL +GD+ +SVQ L+WR+ED  +  + +DYE  + Y++  LV  P+LG+V  D   N+K+L+Y P    +RGG++L+C ADF++G+ V A  P+    N+L   R    +G LDGS+ +L P++ER FRRLYALQG+M NALEH A  NPRGARLF      AAA   G MKG+LDG +LWRF  L A+VQ ELTRAIGTTVD VL +LL++D  A
Sbjct:    4 GPVGAVAQISRYVATAAAASITILEWDPKSDSLRPVGIYEASQYVVTMSVVK----TFLVLGDVMNSVQFLMWRDEDRSINQLAKDYEPTQVYATVFLVDQPSLGIVVGDSSGNIKILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPRGARLFRSQLPAAAAAEGGRMKGVLDGALLWRFVSLPAQVQCELTRAIGTTVDAVLLSLLDVDAQA 272          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.770e-78
Identity = 133/248 (53.63%), Postives = 169/248 (68.15%), Query Frame = 1
Query:   82 WNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAE-PGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLAA 822
            W+ +  +L  IGF +   +++S++++   +H F+ VGD Y SVQL+VWREEDH L  + +D+E  + +S+  L+  P + +V  D  RN+KVLQY P A  +RGG KLLCQ+DF LGS V  L  R    N     R  LL GTLDG LG +LPVDERVFRRLYALQGIMSNAL H  AANPR  RLF   P FR   ++     MLDG++LWRF GLDA+ Q +LTRAIGTTVD V+ANLL+IDLA+
Sbjct:   13 WDPKTCTLELIGFHDPRVYVMSLSVI---KHKFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSAEYLIDEPGMAIVVADGRRNVKVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTFRYETKQN----MLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLAS 253          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 201 bits (512), Expect = 6.060e-59
Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 1
Query:    7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 816
            GP +AI QLG H+++AAG  + V  ++A+ + L PI F++A  ++VS+ +V+    T +AV D YHSV LL W E D  H L+++G+DY    +A+   S  +V  P+LG++  D   NL++LQY PA  E+RGGN+L+ +ADF+L   ++ L       +PRP    R G R   ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H  A NPRG RL    G+ A  R+   KG LDG +LWRF GL    Q +L  AIGT+ + VL +LLE+D+
Sbjct:  121 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 390          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.000e-55
Identity = 123/282 (43.62%), Postives = 180/282 (63.83%), Query Frame = 1
Query:    7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREED--HQLKMVGRDYE---AAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL-------LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDL 816
            GP +AI QLG H+++AAG  + V  ++A+ + L PI F++A  ++VS+ +V+    T +AV D YHSV LL W E D  H L+++G+DY    +A+   S  +V  P+LG++  D   NL++LQY PA  E+RGGN+L+ +ADF+L   ++ L       +PRP    R G R   ++ G+++G +G L+PV+E+V+RRLYALQ +M NAL H  A NPRG RL    G+ A  R+   KG LDG +LWRF GL    Q +L  AIGT+ + VL +LLE+D+
Sbjct: 1677 GPPTAIAQLGPHIIIAAGPTLWVYAFSAR-EKLKPIAFYDADFYVVSLRVVK----TLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGA-YRAGVR--VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGW-AQGRK---KGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 1946          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.330e-49
Identity = 116/302 (38.41%), Postives = 159/302 (52.65%), Query Frame = 1
Query:    7 GPVSAIRQLGR----HVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------------PAPPNRLGRRRSALLL--------------GTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARR-TGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 819
            GPV+ +  L       +++ AGA ++V  W  + Q L  IGFF A   +  V + +    TF+ + D Y S+  LVWRE D  L ++ +DYE    Y++G +   P +  V  D   NL+  QY P    +RGGNKL+C+AD++LG+  T L               PA      R R A+ L              GT+DG  G + PV+ER FRRLYALQG++ NAL+ + A N RG RLF     R A R     KG+LDG +L R+  L    Q E+ RAIGTTVD ++ NLLE+D A
Sbjct:  245 GPVTVLEGLKTGNQTRLVIGAGAEVTVEQW--KDQQLTQIGFFHAQMQVQGVTMFK----TFMLLSDAYDSIHFLVWRESDKSLTLLAKDYEPTCVYAAGFINRGPTMYFVCHDDRENLQFFQYAPTDPASRGGNKLVCRADYHLGTQTTHLRTHLVRNSLLLGSATPATSWIALRHRDAMALRQEDPDCRRFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVRGWRLFQRTTQRGACRSGERQKGVLDGGLLMRYCQLGYFQQEEIARAIGTTVDMIMDNLLELDCA 540          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.710e-47
Identity = 109/282 (38.65%), Postives = 161/282 (57.09%), Query Frame = 1
Query:    4 RGPVSAIRQLGRHVLVAAG-------ARMSVLHWNAQ-----AQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEID 813
            +G VSA+ QL  HV V  G       AR+ V  W          SL  IGFF+    +VS+ +V++    ++ +GD+ HS+Q + WRE+D  L+++ +D    +     +++  PA+ ++  D  RNL+V Q+ P  +++   N+L   A+F++G+ +T+ +           +R A    +LDG+ G ++PVDE  FRRLYALQGI+ NAL HTAA NPR  RL        A R+   K +LDG +LWRF  LDAR Q  LT AIGTTV+ VL+ L +ID
Sbjct:  183 KGIVSALSQLQAHVAVCEGPNEANACARLEVYAWRMDQGPGLTGSLRLIGFFDQLVLVVSIKVVKN----YVLLGDLRHSIQWVNWREKDSNLQILAKDATCCDVLGCEIVIDAPAIAMLVADDLRNLRVFQFRPDLSKS---NRLQHAAEFHVGAPITSFVRHKVWSASQKLQRFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPRAFRLARRHLTDIAPRQ---KKILDGALLWRFVSLDAREQARLTCAIGTTVENVLSALRDID 454          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A2D4CF34_PYTIN (CPSF_A domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF34_PYTIN)

HSP 1 Score: 166 bits (421), Expect = 1.210e-45
Identity = 102/289 (35.29%), Postives = 156/289 (53.98%), Query Frame = 1
Query:    7 GPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR------PAPPNRLGRRRS---------ALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
            G +S + QLG HVL A G ++ V  +  ++  L    F++A  +IVS+++++     ++   D+Y SV  L WRE+  QL+++ +DYE     ++   V+   L ++  D   NL V+Q+ P   E+RGG +LL  +DF+LG  +T+++ +      P      G R+            LLG+ +GS+G ++ V ERVFRRL+ LQ +M N L    A NPR  R+    G R   R      +   KG LDG VL+RF  LD   Q EL R IGTT + ++ NLLE+
Sbjct:   85 GAISFVSQLGPHVLAAVGMKLIVYEF--KSDQLTACAFYDAQMYIVSLSVIKD----YVMYADVYKSVHFLRWREKQRQLQLLAKDYEPLAITATEFSVAEKKLALLAGDMEENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQITSMIRKATGTSNPPAAQMAGHRKHQEQPSQSQYVTLLGSSEGSVGAIMAVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGGRRTGRPDAWCKQKWKKGFLDGHVLFRFLHLDYVAQKELARCIGTTPEVIIHNLLEV 367          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A8K1CL86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL86_PYTOL)

HSP 1 Score: 172 bits (437), Expect = 4.250e-45
Identity = 105/293 (35.84%), Postives = 160/293 (54.61%), Query Frame = 1
Query:    4 RGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPR-----PAPPNRLGRRRSA----------LLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAAR------RTGMKGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEIDLA 819
            +G +S + QLG +V+ A G +M V  +  ++  LI   F++A  +IVS+++V+     ++  GD+Y SV  L W+E+  QL+++ +DYE     S+   +    L ++ TD   NL V+QY P   E+RGG +LL  +DF+LG  +T++  +     P PP    +R+             +LGT +GS+  ++PV ERVFRRL+ LQ +M N L    A NPR  R+    G R   R      +   KG LD  VL+RF  LD   Q E+ R IGTT + ++ NLLE+  A
Sbjct: 1483 QGAISCVAQLGPYVVAAVGMKMIVYEY--KSDQLIGCAFYDAQMYIVSISVVKD----YVMYGDVYKSVHFLRWKEKQRQLQLLAKDYEPLAVTSTEFNLFERRLALLATDMEENLHVMQYAPQDIESRGGQRLLRTSDFHLGMQITSMFRKQVGVAPPPPRPAHQRQPVQQPSGQNVYVTVLGTSEGSVSAVIPVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGRRRTGRPDAWSKQKWKKGFLDAHVLFRFLHLDYVAQKEIARCIGTTPEVIIHNLLEVQRA 1769          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.600e-44
Identity = 106/282 (37.59%), Postives = 158/282 (56.03%), Query Frame = 1
Query:    1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
            ++G +S + QLG +VL A G+++ V  +  +   L+   FF+A  +IVS+ +++S    F+  GD+Y S+ LL W+ ++  + M+ +DYE     ++ + V    LG++ +D   N+ V+QY P   E+RGG +LL  +DF++G+ VT+L+ +    + +       LL T +G LG+L+PV ER+FRRLY LQ IM NAL   A  NPR         FR A   R TG           K  LD  V+ RF  LD   Q EL R IGTT + VL NLLE+
Sbjct: 1216 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----FIVYGDLYKSIHLLYWKPQEKTIIMLAKDYEPLSITTTEVSVMGTQLGLIASDMQANIHVMQYEPTHVESRGGQRLLRTSDFHVGARVTSLMRKRVLESPIPLY--VTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVLHNLLEL 1481          
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.430e-42
Identity = 105/282 (37.23%), Postives = 156/282 (55.32%), Query Frame = 1
Query:    1 ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSVALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLLVSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTALLPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNALEHTAAANPRGARLFAEPGFRAAA--RRTGM----------KGMLDGTVLWRFPGLDARVQTELTRAIGTTVDTVLANLLEI 810
            ++G +S + QLG +VL A G+++ V  +  +   L+   FF+A  +IVS+ +++S    ++  GD+Y SV  L+W+ ++  + M+ +DYE     ++ + V    LG++  D   N+ VLQY P   E+RGG +LL  +DF++G+ VT+LL +    +         LL T +G +G+L+PV ER+FRRLY LQ IM NAL   A  NPR         FR A   R TG           K  LD  V+ RF  LD   Q EL R IGTT + V+ NLLE+
Sbjct: 1211 KQGGISMVSQLGAYVLAAVGSKLIV--YELKGGQLVGCAFFDAQLYIVSLNVIKS----YILYGDLYKSVHFLLWKPQEKTIIMLAKDYEPLSLTTTEVSVMDTQLGLIACDMQSNVHVLQYEPTHVESRGGQRLLRTSDFHVGARVTSLLRKRVVESPFPFY--VTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPRE--------FRQAVHTRSTGRPDAWCTWKAKKAFLDTAVIGRFSDLDYVAQRELARCIGTTPEVVMHNLLEL 1476          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z873_9STRA4.850e-8348.35Cleavage/polyadenylation specificity factor, A sub... [more]
D7G8W9_ECTSI1.770e-7853.63CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
K8YVP3_NANGC6.060e-5943.62Cleavage and polyadenylation specificity factor su... [more]
A0A4D9CM95_9STRA4.000e-5543.62Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BI36_9STRA1.330e-4938.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2D575_9STRA1.710e-4738.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4CF34_PYTIN1.210e-4535.29CPSF_A domain-containing protein n=1 Tax=Pythium i... [more]
A0A8K1CL86_PYTOL4.250e-4535.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WGC0_9STRA6.600e-4437.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L0M5_9STRA1.430e-4237.23Aste57867_14310 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7433contigP-wetherbeei_contig7433:133..1741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8W9
PFAMsCPSF_A,MMS1_N
Model size825
Max annot lvl2759|Eukaryota
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.91e-79
EggNOG OGsCOG5161@1|root,KOG1896@2759|Eukaryota
DescriptionmRNA cleavage
Cds size825
COG categoryA
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186981.2028043-CDS-P-wetherbeei_contig7433:132..3351683186981.2028043-CDS-P-wetherbeei_contig7433:132..335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7433 133..335 +
1683186981.2156363-CDS-P-wetherbeei_contig7433:566..7771683186981.2156363-CDS-P-wetherbeei_contig7433:566..777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7433 567..777 +
1683186981.226129-CDS-P-wetherbeei_contig7433:1025..11931683186981.226129-CDS-P-wetherbeei_contig7433:1025..1193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7433 1026..1193 +
1683186981.2361476-CDS-P-wetherbeei_contig7433:1498..17411683186981.2361476-CDS-P-wetherbeei_contig7433:1498..1741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7433 1499..1741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7433.1.1prot_P-wetherbeei_contig7433.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7433 133..1741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7433.1.1

>prot_P-wetherbeei_contig7433.1.1 ID=prot_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
ERGPVSAIRQLGRHVLVAAGARMSVLHWNAQAQSLIPIGFFEATTHIVSV
ALVESARHTFLAVGDMYHSVQLLVWREEDHQLKMVGRDYEAAEAYSSGLL
VSVPALGVVTTDRHRNLKVLQYMPAAAEARGGNKLLCQADFNLGSHVTAL
LPRPAPPNRLGRRRSALLLGTLDGSLGMLLPVDERVFRRLYALQGIMSNA
LEHTAAANPRGARLFAEPGFRAAARRTGMKGMLDGTVLWRFPGLDARVQT
ELTRAIGTTVDTVLANLLEIDLAAV
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mRNA from alignment at P-wetherbeei_contig7433:133..1741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7433.1.1 ID=mRNA_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1609bp|location=Sequence derived from alignment at P-wetherbeei_contig7433:133..1741+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCGGGCCTGTGTCGGCCATTCGGCAGCTCGGCCGCCACGTCCTCGT CGCCGCTGGCGCCCGCATGTCTGTGCTGCACTGGAACGCCCAGGCGCAGT CGCTGATCCCCATCGGGTTCTTCGAGGCGACGACGCACATCGTGTCGGTG GCGCTCGTCGAGTCGGCGCGCCACACCTTCCTCGCCGTTGGCGACATGTA CCAGTGAGTGATGAGGGAGGCAGGGACGTGGCGGGAAGATTGTGAAGGTT CTCCTTTTTTTCACTGTCTGTCTACGCTTTTCCCTTTCTCTTGATGATTG GAGGGCTGAGAAGTAGGCGGGCGGTGGAGGCGGGTGGAGGAGGGCTGCGG GCATTCATTTTGTTACCCCTTTTCTGTTGCTACGTTGACTCCCAAGACCC AACCAACAAACCGTGACCCCTGCCTCGCTACCAGCTCGGTGCAGCTGCTG GTGTGGCGGGAGGAGGACCACCAGCTCAAGATGGTCGGCCGCGACTACGA AGCCGCCGAGGCATACTCGTCCGGCCTGCTCGTGTCAGTGCCAGCGCTCG GCGTCGTCACGACGGACCGCCACCGCAATTTGAAGGTTCTGCAGTACATG CCGGCGGCCGCCGAGGCGCGCGGTGGCAACAAGCTGCTCTGCCAGGTGTG TTAAGAGCGGGAGGAAGAGGTTTTGGGGGGTGGAGCGGTTCTAAGCATTG AAGATCTACCGGTACTCCTCTGCCTGTTGGTCTGTGTTTTTGCAACTTTA CGAGGTGCATTCGCTTTTGCATCATTTTTTCTGTCTTCCTTGGGACTTGC TCGCGAGGTGCTGTTAATGAGGCGGGCCGCCAGAGGGCAACGAGCCACCA AACACACGCCACTCTATTCTCAAAAACTAAACCGAACTCCCAGGCGGACT TCAACCTTGGCTCGCATGTGACCGCGCTGCTGCCGCGGCCAGCGCCGCCG AACCGGCTGGGACGGCGGCGGAGCGCGCTGCTCCTCGGCACACTTGACGG GTCGCTCGGCATGCTGCTGCCCGTCGACGAGCGCGTCTTTCGCCGCCTCT ACGCCCTCCAGGTAAGAGATAAATAGATGATGAGGAGGCAGGAGTTGAAA GCGCGCCGGCGCTGTTGCTCTATATTCTGTTTGTTGCCTTTTGAGCGTTG TGGGAGCATGGCCTTTTGTTTTTGCGTGTGCATTATCCCCCGGTTCGTTC GATGCCTTCTTCGCTCCGACGGCAGCTCTTCGTTTTTGCTCACGTTTGAG GAGAAGGGGGAAATAAGGTTGGGTTGCACTGGAAGAGCCGATCGCTCTTC ACCTGCCGACGTCTGTCCACCTGCTGCCATCGCCTTGCTCTTTCGCCCTT TCGCGCCTTCCCGCAGGGCATAATGTCCAACGCGCTCGAACACACGGCGG CCGCCAATCCCCGCGGCGCGCGCCTCTTCGCCGAGCCCGGCTTCCGCGCC GCAGCACGCAGGACGGGCATGAAAGGCATGCTGGACGGCACGGTGCTCTG GCGCTTCCCGGGGCTCGATGCGCGCGTCCAGACGGAGTTGACGCGCGCCA TCGGCACCACGGTCGACACTGTGCTCGCCAACCTACTGGAGATCGACCTA GCGGCTGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7433:133..1741+

>mRNA_P-wetherbeei_contig7433.1.1 ID=mRNA_P-wetherbeei_contig7433.1.1|Name=mRNA_P-wetherbeei_contig7433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig7433:133..1741+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCGGGCCTGTGTCGGCCATTCGGCAGCTCGGCCGCCACGTCCTCGT
CGCCGCTGGCGCCCGCATGTCTGTGCTGCACTGGAACGCCCAGGCGCAGT
CGCTGATCCCCATCGGGTTCTTCGAGGCGACGACGCACATCGTGTCGGTG
GCGCTCGTCGAGTCGGCGCGCCACACCTTCCTCGCCGTTGGCGACATGTA
CCACTCGGTGCAGCTGCTGGTGTGGCGGGAGGAGGACCACCAGCTCAAGA
TGGTCGGCCGCGACTACGAAGCCGCCGAGGCATACTCGTCCGGCCTGCTC
GTGTCAGTGCCAGCGCTCGGCGTCGTCACGACGGACCGCCACCGCAATTT
GAAGGTTCTGCAGTACATGCCGGCGGCCGCCGAGGCGCGCGGTGGCAACA
AGCTGCTCTGCCAGGCGGACTTCAACCTTGGCTCGCATGTGACCGCGCTG
CTGCCGCGGCCAGCGCCGCCGAACCGGCTGGGACGGCGGCGGAGCGCGCT
GCTCCTCGGCACACTTGACGGGTCGCTCGGCATGCTGCTGCCCGTCGACG
AGCGCGTCTTTCGCCGCCTCTACGCCCTCCAGGGCATAATGTCCAACGCG
CTCGAACACACGGCGGCCGCCAATCCCCGCGGCGCGCGCCTCTTCGCCGA
GCCCGGCTTCCGCGCCGCAGCACGCAGGACGGGCATGAAAGGCATGCTGG
ACGGCACGGTGCTCTGGCGCTTCCCGGGGCTCGATGCGCGCGTCCAGACG
GAGTTGACGCGCGCCATCGGCACCACGGTCGACACTGTGCTCGCCAACCT
ACTGGAGATCGACCTAGCGGCTGTC
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