prot_P-wetherbeei_contig7066.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig7066.2.1
Unique Name	prot_P-wetherbeei_contig7066.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	112

Homology

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 140 bits (353), Expect = 7.150e-41
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRA 85
            MYDIFGK+GAIRQIR+GDK +T+G+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQP +MAK+MD E+++RELEELKA Y A
Sbjct:   35 MYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKYLA 119

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 9.550e-41
Identity = 68/93 (73.12%), Postives = 82/93 (88.17%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGG 93
            MYDIFGK+GAIRQIRLGD+Q+TRG+AFVVY+DIYDAK A+DHLSGFNV GRYLIVLYYQP KMAKRMD + KK+ELEEL+A  +  ++++  G
Sbjct:   25 MYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAG 117

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.060e-38
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKD 88
            MYDIFGK+GAIRQIR+GDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYL+VLYYQ ++M KRMD +KK++ELEELK  Y    D
Sbjct:   37 MYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSAD 124

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.060e-38
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGGGS 95
            MYDIFGK+GAIRQIR+GDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQ  +M KR+D +KK+RELEELKA +      EEGG S
Sbjct:   35 MYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSG--EEGGES 127

[Close]

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A397G311_9GLOM (RRM domain-containing protein n=8 Tax=Glomeromycetes TaxID=214506 RepID=A0A397G311_9GLOM)

HSP 1 Score: 132 bits (331), Expect = 1.540e-37
Identity = 61/83 (73.49%), Postives = 77/83 (92.77%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIY 83
            MYDIFGK+GAIRQIRLG +++TRG+AFVVYEDI+DAK A DHL+GFNV+GRYLIVLYYQPNK+ K+M+++KK+ EL+ELK+ Y
Sbjct:   36 MYDIFGKYGAIRQIRLGSEKDTRGTAFVVYEDIFDAKAACDHLNGFNVMGRYLIVLYYQPNKVTKKMNLQKKEEELKELKSRY 118

[Close]

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.590e-37
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAG 86
            MYDIFGK+GAIRQIRLGDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQ  K  KR+D  KK+RE+EE+KA +  G
Sbjct:   34 MYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVG 119

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: U9T579_RHIID (RRM domain-containing protein n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9T579_RHIID)

HSP 1 Score: 130 bits (327), Expect = 2.190e-37
Identity = 61/83 (73.49%), Postives = 76/83 (91.57%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIY 83
            MYDIFGK+GAIRQIRLG +++TRG+AFVVYEDI+DAK A DHL+GFNV+GRYLIVLYYQPNK+ K+M+++KK+ EL ELK+ Y
Sbjct:    1 MYDIFGKYGAIRQIRLGCEKDTRGTAFVVYEDIFDAKAACDHLNGFNVMGRYLIVLYYQPNKVTKKMNLQKKEEELRELKSRY 83

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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A4V1IXH8_9FUNG (RRM domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IXH8_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 6.070e-37
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAG 86
            MYDIFGK+GAIRQIR G   +T+G+AFVVYEDIYDAK A +HLSGFNV+GRYLIVLYYQPNK+ KRM++ KK++ELEELK+ Y  G
Sbjct:   35 MYDIFGKYGAIRQIRSGTATDTKGTAFVVYEDIYDAKAACEHLSGFNVMGRYLIVLYYQPNKVTKRMNLAKKEQELEELKSRYGVG 120

[Close]

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A6A4V7I5_AMPAM (Splicing factor 3B subunit 6 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4V7I5_AMPAM)

HSP 1 Score: 129 bits (324), Expect = 1.740e-36
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 0

Query:    1 MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDK 89
            MYDIFGKFGAIRQIR+G+  ETRG+AFVVYEDI+DAK A DHLSGFNV  RYL+VLYYQPNK  K++D +KKK EL+++KA Y   ++K
Sbjct:   35 MYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQPNKAFKKLDADKKKEELDKMKAKYNLNEEK 123

[Close]

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A075AUH9_ROZAC (Pre-mRNA branch site protein p14 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AUH9_ROZAC)

HSP 1 Score: 129 bits (323), Expect = 3.420e-36
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0

Query:    2 YDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAG 86
            YD+FGK+GAIRQIR+G  +ETRG+AFVVYEDIYDAK A DHLSGFNVLGRYLIVLY+ PNKM+K+M  EKKK ELE LK  +  G
Sbjct:   43 YDLFGKYGAIRQIRVGTDKETRGTAFVVYEDIYDAKNACDHLSGFNVLGRYLIVLYFNPNKMSKKMSAEKKKEELEALKQKFGLG 127

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6S9GFW4_HETAK	7.150e-41	78.82	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
D7G0W6_ECTSI	9.550e-41	73.12	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S2DAY0_9STRA	1.060e-38	73.86	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2C985_9STRA	2.060e-38	73.68	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A397G311_9GLOM	1.540e-37	73.49	RRM domain-containing protein n=8 Tax=Glomeromycet...	[more]
A0A835YN30_9STRA	1.590e-37	75.58	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
U9T579_RHIID	2.190e-37	73.49	RRM domain-containing protein n=5 Tax=Rhizophagus ...	[more]
A0A4V1IXH8_9FUNG	6.070e-37	73.26	RRM domain-containing protein n=1 Tax=Thamnocephal...	[more]
A0A6A4V7I5_AMPAM	1.740e-36	69.66	Splicing factor 3B subunit 6 n=3 Tax=Thoracicalcar...	[more]
A0A075AUH9_ROZAC	3.420e-36	74.12	Pre-mRNA branch site protein p14 n=1 Tax=Rozella a...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..111
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 1..80
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 1..80
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..87 e-value: 4.7E-13 score: 51.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..53 e-value: 1.2E-9 score: 37.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..60 score: 12.048673
IPR034150	SF3B6, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 1..59 e-value: 1.2503E-37 score: 120.029
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig7066	contig	P-wetherbeei_contig7066:1437..2382 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig7066.2.1	mRNA_P-wetherbeei_contig7066.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig7066 1368..2653 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig7066.2.1 ID=prot_P-wetherbeei_contig7066.2.1|Name=mRNA_P-wetherbeei_contig7066.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLG
RYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGGGSGDSSG
KTATGKRPVPP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR034150	SF3B6_RRM
IPR035979	RBD_domain_sf