prot_P-wetherbeei_contig70.4.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig70.4.1
Unique Nameprot_P-wetherbeei_contig70.4.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length697
Homology
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BLAST of mRNA_P-wetherbeei_contig70.4.1 vs. uniprot
Match: A0A835Z807_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z807_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.290e-8
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 0 
Query:  190 VAYFWLKDELGVGETMLEQIILRHGGLLSLDVEKNLEPKAVFFETLGLPRWALGVMVERNPSFMWLSLDANIKPTLAWLHWHV 272
            +AYF+++D LGV +  L +IIL+   +L L V +NL  K+ FF                         D NIKPTLAWLHWHV
Sbjct:    1 MAYFFIRDTLGVSDAALSRIILQSPNVLGLSVARNLNLKSAFFNXXXXXXXXXXXXXXXXXXXXXXXXDDNIKPTLAWLHWHV 83
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BLAST of mRNA_P-wetherbeei_contig70.4.1 vs. uniprot
Match: A0A7S1TSB6_9STRA (Hypothetical protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSB6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.900e-5
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0 
Query:  190 VAYFWLKDELGVGETMLEQIILRHGGLLSLDVEKNLEPKAVFFET-LGLPRWALGVMVERNPSFMWLSLDANIKPTLAWLHWHVGLSHSE 278
            +AYF+LKDELG+GE  + +I++    +LSL VE+NL PK    +  L     A+   V R P+ +  S+D  +K  L WLH  +GL  S+
Sbjct:  130 LAYFFLKDELGLGEEDMLRIMMTCDTVLSLKVEENLRPKVELLKRELKFDDAAVARCVGRAPAVLSRSMDT-LKAMLDWLHQRLGLKRSD 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig70.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z807_9STRA5.290e-839.76mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1TSB6_9STRA1.900e-540.00Hypothetical protein n=5 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 581..612
e-value: 8.9
score: 15.3
coord: 243..275
e-value: 44.0
score: 13.0
coord: 465..497
e-value: 1100.0
score: 3.5
coord: 280..312
e-value: 0.063
score: 22.4
coord: 317..349
e-value: 0.017
score: 24.3
coord: 544..576
e-value: 210.0
score: 9.2
coord: 428..459
e-value: 13.0
score: 14.7
coord: 354..386
e-value: 0.0038
score: 26.5
coord: 207..238
e-value: 0.97
score: 18.5
coord: 391..423
e-value: 39.0
score: 13.1
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 186..342
e-value: 2.8E-19
score: 69.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 163..307
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 347..606
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 198..342
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 289..491
e-value: 1.2E-38
score: 134.8
coord: 530..625
e-value: 5.1E-8
score: 34.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 502..524
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 163..307
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 347..606
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 198..342

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig70contigP-wetherbeei_contig70:3619..6150 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig70.4.1mRNA_P-wetherbeei_contig70.4.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig70 3570..8178 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig70.4.1 ID=prot_P-wetherbeei_contig70.4.1|Name=mRNA_P-wetherbeei_contig70.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=697bp
MRLRPAVLTPTLRPSCLLPSLLRYPLTARHRVARPLFSSKLPGSPSEEAG
SSVFSLILSPENGFVDMDGLDPEEWEWVLDDIDDEEENEEENDIDGLTLD
VALEAAAAGEHFDFALTQDGVVARTGLQPPLPEDADDSGINSEDDNAITV
DPAPAAAAAATRVVSEEGAARLLTRLAQGEPLLDALRKKVAYFWLKDELG
VGETMLEQIILRHGGLLSLDVEKNLEPKAVFFETLGLPRWALGVMVERNP
SFMWLSLDANIKPTLAWLHWHVGLSHSEICGALLKAPALLGLRVSSNLAP
KLDFLQDEVGLTPAQVRRMVATAPTVLGLSLEHNLRPKVGFLRGPSGLTR
ETVARVVAAQPRLLGASLDRTLAPRLQFLRRDLGLGAGPLNRVLHRSPML
LGFGTATRLVPTMALLRAELQCSLAQCRLLVIRSPRIFCNSPETLRVRIA
LLRDRLELTQPAEAIRLVVGCPNALSLRLDVRLDELLALLCGGSGCGDSS
SDDGGGGGGGDGNNAGNRGGSASGSSIGVSSSGERLGMSLAEARKVLLGL
PGLLGCSVESNLGPKVAALVAAASGDAAAVRAMVLASPALLGYSLAGRIE
PRLRDLAAIGQPVAMLPRIVCKPTAEYKRWLAKRGAAAGAAAAEAAAAVA
ADARDSSVSGKARAVAARRLKAAKGSLVDDVVGSRRPRRRGASAAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf