prot_P-wetherbeei_contig6972.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6972.2.1
Unique Nameprot_P-wetherbeei_contig6972.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length97
Homology
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.030e-42
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERR 87
            MIIPVRCFTCGKVIGNKWETYLSLLQADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS+ERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.990e-41
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQA 91
            MIIPVRCFTCGKVIGNKWETYL LLQ+D  EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS+ERR  Q 
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRPMQG 72          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 137 bits (346), Expect = 1.080e-40
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQ 90
            MIIPVRCFTCGKVIGNKWE+YL LL+ADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN++ERR +Q
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQ 71          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.650e-40
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERR 87
            MIIPVRCFTCGKV+GNKW++YL LL+ADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN++ERR
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERR 68          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.040e-39
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0
Query:   15 VLRTTMIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 82
            +L+  MIIPVRCFTCGKVIGNKWETYLSLLQADY EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   28 LLKNKMIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 134 bits (337), Expect = 4.330e-39
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQARQQ 94
            MIIPVRCFTCGKVIGNKWETYL LLQA+Y EGDA+D LGL RYCCRRM++THVDLIEKLLNYN++ER   Q R+Q
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLERNPVQQREQ 75          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: RPBAL_ARATH (DNA-directed RNA polymerase subunit 10-like protein n=8 Tax=Streptophyta TaxID=35493 RepID=RPBAL_ARATH)

HSP 1 Score: 131 bits (330), Expect = 2.520e-38
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRD 88
            MI+PVRCFTCGKVIGNKW+TYL LLQADY EGDALD LGL RYCCRRM++THVDLIEKLLNYN+ME+ D
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A7S4B650_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B650_CHRCT)

HSP 1 Score: 132 bits (332), Expect = 3.810e-38
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQA 91
            MIIPVRCFTCGKVIGNK++ YL LLQADY EGDALD LGLKRYCCRRM+LTHVDLIEKLLNYN++ER D+QA
Sbjct:   27 MIIPVRCFTCGKVIGNKYDKYLELLQADYTEGDALDALGLKRYCCRRMLLTHVDLIEKLLNYNTLERGDAQA 98          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 130 bits (328), Expect = 4.190e-38
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 83
            MIIPVRCFTCGKVIGNKWETYL LLQADY EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64          
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.420e-38
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0
Query:   20 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 83
            MIIPVRCFTCGKVI NKWETYLSLLQAD+ EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE1.030e-4297.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHW2_9STRA6.990e-4188.89DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN1.080e-4088.73Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SAT8_9STRA8.650e-4088.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1V7Q3_9STRA1.040e-3991.18Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A2P6TBS1_CHLSO4.330e-3980.00DNA-directed RNA polymerases and III subunit RPABC... [more]
RPBAL_ARATH2.520e-3884.06DNA-directed RNA polymerase subunit 10-like protei... [more]
A0A7S4B650_CHRCT3.810e-3884.72Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
B8C402_THAPS4.190e-3892.19DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
A0A1E7EXD3_9STRA7.420e-3892.19DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 20..90
e-value: 4.8E-40
score: 137.5
NoneNo IPR availablePANTHERPTHR23431:SF6SUBFAMILY NOT NAMEDcoord: 20..89
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10PFAMPF01194RNA_pol_Ncoord: 21..78
e-value: 7.5E-32
score: 109.4
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10PANTHERPTHR23431DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBERcoord: 20..89
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 20..82
score: 19.77309
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 21..30
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 20..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6972contigP-wetherbeei_contig6972:2217..2507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6972.2.1mRNA_P-wetherbeei_contig6972.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6972 2093..2527 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6972.2.1 ID=prot_P-wetherbeei_contig6972.2.1|Name=mRNA_P-wetherbeei_contig6972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MGKRKRGQNFLRLLVLRTTMIIPVRCFTCGKVIGNKWETYLSLLQADYGE
GDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQARQQEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RPABC5/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10