prot_P-wetherbeei_contig5946.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig5946.1.1
Unique Name	prot_P-wetherbeei_contig5946.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	185

Homology

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI000719C19E (MMS19 nucleotide excision repair protein homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C19E)

HSP 1 Score: 82.0 bits (201), Expect = 7.670e-15
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 184
            +++QR F+   P L  A   A          L+A+ ++ + +P  V+ SE P ++   + +L  GD+D        L    L  L AL    D   ++  H  T+VP LL LTRR +    + RI AL  LR ++ LP+  + PH+  V R L+AALDD++R+VRQAAA+ R +W +L S
Sbjct:  693 MYRQRFFLETSPLLVAAFHLA--PKDMKPHYLVALSIMLRYIPHQVMLSEFPPLLPLLLESLVCGDAD--------LQLSTLAALSALLT--DTPQLLIGHADTIVPLLLTLTRRED--SMKLRISALDCLRIVSSLPHQVVFPHQQQVIRQLSAALDDKKRLVRQAAAKTRGEWCILGS 858

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A8B7XLB4_ACAPL (MMS19 nucleotide excision repair protein n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XLB4_ACAPL)

HSP 1 Score: 76.6 bits (187), Expect = 5.790e-13
Identity = 63/180 (35.00%), Postives = 95/180 (52.78%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 184
            +++QRLF+   P + +               L+++  L   VPR VL SELP +M   V++L   DS         L    LE L  L +  D   I+S +V +L+P LL L+     A  + R+ AL+ + EL  L + ++ PH+  VARGL   LDD++RVVR+ A +ARN W++L S
Sbjct:  864 MYRQRLFLQLLPGIIEGHCKTAQGTKKNY--LLSLSHLLHFVPRQVLLSELPPLMPLLVQSLHQEDS--------ALYESVLERLALLTH--DAPGIISQYVDSLLPDLLRLSGCE--ASMKVRVGALKCIGELTTLEHHKVFPHKLKVARGLIPRLDDKKRVVRKEAVKARNLWMMLGS 1029

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A210R1X6_MIZYE (MMS19 nucleotide excision repair protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R1X6_MIZYE)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-11
Identity = 58/179 (32.40%), Postives = 91/179 (50.84%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCN-GDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 182
            +++QR+FV    RL +   ++          L+ +  + K +P+ VL SELP +    V +L   D D             L T+  LC+   D   ++S HV TLVP+LL+L     P+  + RI AL+ +  L  LP   L P++  V R L   LDDR+R+VR+ A  AR++W ++
Sbjct:  845 MYKQRIFVENVGRLKEGFASS--PPATKKNYLICLSHMLKILPKQVLLSELPPLFPLMVHSLLCDDLD-----------LQLSTMTILCDLTHDAPDVISKHVDTLVPQLLQLC--THPSSMKIRIKALRCISALCVLPVHLLLPYKTRVVRSLEPVLDDRKRLVRREAVTARSEWCLI 1008

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: L8GZ09_ACACA (MMS19 nucleotide excision repair protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ09_ACACA)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-11
Identity = 65/182 (35.71%), Postives = 89/182 (48.90%), Query Frame = 0

Query:    1 RASPLWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTR-RVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLV 181
            R   L++QR F    P L      A          L+A+  L K +P+SVL SEL TVM   V+++ + D          L    L+TL  L    +   +VS HV   VP LL LT  R + A    RI AL  L     LP+ ++ P++  +A  L+AALDD +R VR+AA + RN WL 
Sbjct:  920 RIRVLYKQRFFSELLPTLLRGFHEA--SAPSKPAHLLAISYLLKHIPKSVLLSELHTVMPLIVQSINADDEG--------LIASTLQTLSMLIK--EAPNMVSEHVSAFVPALLRLTTFRPKMA---IRIAALDCLSSFITLPFYKIFPYQKKIANELSAALDDPKRAVRKAAVKCRNQWLT 1086

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A401SRL4_CHIPU (MMS19 nucleotide excision repair protein n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SRL4_CHIPU)

HSP 1 Score: 70.5 bits (171), Expect = 7.790e-11
Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 184
            +++QR F    P+L     +A           ++ +L   S+P+ VL +ELP+++T  + AL   D          +    L  L  L    D    +S HV TLV KLL LT    PA  + RI +LQ +  L +LP   + PH+P V + LA  LDD++R+VR+ A RAR +W +L S
Sbjct:  865 MYRQRFFTENVPKLVQGFHSASEDNKSNYLKALSHVL--NSLPKQVLMTELPSLLTLLLEALSCSDQ--------VVQLSTLGCLHPLLL--DATQTMSLHVDTLVNKLLNLTS--SPAM-KVRIASLQCMHALTKLPPHVILPHKPRVIQALAKPLDDKKRLVRKEAVRARGEWFLLGS 1029

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI00148A9C21 (MMS19 nucleotide excision repair protein homolog n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A9C21)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-10
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCN--GDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 182
            L++QR F     RLT+    A          L+A+    +S+P+SVL  ELP +    V++L   +            +    T+ ALC    D  D +V  HV +++P+LL+LT   +PA  R R  AL+ L EL  LP P + P++P V R L   LDD++R+VR  A +ARN+W +L
Sbjct:  832 LYKQRFFTENSSRLTEGFQNASAGTKKNY--LIALSHCLQSLPKSVLVRELPQLFPLLVQSLLCDN-----------VQLQQSTMDALCTMITDAPDFLVK-HVDSVIPQLLKLTT-YKPAM-RVRTSALRCLLELVSLPAPVILPYKPQVVRSLEGVLDDKKRLVRLEAVKARNEWCLL 995

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI001B7DF3F4 (MMS19 nucleotide excision repair protein homolog n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DF3F4)

HSP 1 Score: 69.3 bits (168), Expect = 1.950e-10
Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 184
            +++QR F    P+L     +A           ++ +L   S+P+ VL +ELP+++T  + A+   D          +    L  L  L    D   I+S HV TLV KLL LT    PA  + RI +LQ +  L +LP   + PH+  V + LA  LDD++R+VR+ A RAR +W +L S
Sbjct:  865 MYRQRFFTENVPKLVQGFHSASEDNKSNYLKALSHVL--NSLPKQVLMTELPSLLTLLLEAMSCSDQ--------VVQLSTLGCLHPLLL--DAPQIMSLHVETLVNKLLNLT--TSPAM-KVRIASLQCMHALTKLPSHVILPHKSRVIQALAKPLDDKKRLVRKEAVRARGEWFLLGS 1029

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A8B8ENX3_CRAVI (MMS19 nucleotide excision repair protein n=5 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ENX3_CRAVI)

HSP 1 Score: 68.9 bits (167), Expect = 2.640e-10
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 0

Query:    5 LWQQRLFV-TAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 182
            L++QR F   + P +    TA++         LMA+    +S+P+SVL  ELP +    V++L   +          L +  +ETL  +    D   ++  H+ T++P+LL+LT   +P   R R  AL+ L  L  LP P + P+RP V + L   LDD++R+VR  A +ARN+W +L
Sbjct:  831 LYKQRFFTENSSPIIEGFQTASISTKKNY---LMALSHCLQSLPQSVLLRELPQLFPLLVQSLLCDNIQ--------LQQSTMETLCTMIT--DAPDVIVKHIDTVIPQLLKLTA-YKPVM-RVRTCALRCLLGLVSLPTPVILPYRPRVIKALEGVLDDKKRLVRLEAVKARNEWCLL 994

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI001C4C49D7 (LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C49D7)

HSP 1 Score: 68.6 bits (166), Expect = 3.590e-10
Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 182
            +++QR F    P+L     AA           ++ +L    +P++VL +ELP++++  + AL   D          +    L  L  L    D   I+S H+ TLV K L LT   +      RI ALQ L  LA LP P + P++P V + LA  LDD++R+VR+ A  AR +W +L
Sbjct:  856 MFRQRFFTECVPQLVQRFHAAAPGMKSNYLKALSHIL--NHLPKTVLVTELPSLLSLLLEALSCPDH--------VVQLSTLHCLQPLLL--DAPHIMSLHIDTLVGKFLNLT---DSPAMAIRIAALQCLHALASLPTPVVIPYKPRVIKALAKPLDDKKRLVRKEAVTARGEWFLL 1018

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BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A812D4Y3_SEPPH (MMS19 nucleotide excision repair protein n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D4Y3_SEPPH)

HSP 1 Score: 67.8 bits (164), Expect = 6.600e-10
Identity = 59/178 (33.15%), Postives = 93/178 (52.25%), Query Frame = 0

Query:    5 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 182
            +++QR FV    RL+++   A          L+A+  L   +PR VL SELP ++   V AL S +          L    + TL  +   D+  A+++ HV  +VP+LL+L++       + RI +L+ L  L +LP   L P+R  V R L   LDD++R+VR+ A RAR +W +L
Sbjct:  840 MYRQRFFVEHIQRLSESFHHAKPELKKNY--LIAVSHLLTFLPRQVLVSELPPLIPMLVLALMSDECK--------LQLSTMSTLKTVM--DESPALLAQHVNLIVPRLLKLSKT--DTSMKVRIASLECLEYLTQLPASTLLPYRREVIRFLEPVLDDKKRLVRRQAVRARGEWYLL 1003

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI000719C19E	7.670e-15	35.00	MMS19 nucleotide excision repair protein homolog n...	[more]
A0A8B7XLB4_ACAPL	5.790e-13	35.00	MMS19 nucleotide excision repair protein n=1 Tax=A...	[more]
A0A210R1X6_MIZYE	1.680e-11	32.40	MMS19 nucleotide excision repair protein n=1 Tax=M...	[more]
L8GZ09_ACACA	1.710e-11	35.71	MMS19 nucleotide excision repair protein n=1 Tax=A...	[more]
A0A401SRL4_CHIPU	7.790e-11	33.89	MMS19 nucleotide excision repair protein n=4 Tax=O...	[more]
UPI00148A9C21	1.050e-10	35.00	MMS19 nucleotide excision repair protein homolog n...	[more]
UPI001B7DF3F4	1.950e-10	33.33	MMS19 nucleotide excision repair protein homolog n...	[more]
A0A8B8ENX3_CRAVI	2.640e-10	32.96	MMS19 nucleotide excision repair protein n=5 Tax=C...	[more]
UPI001C4C49D7	3.590e-10	32.58	LOW QUALITY PROTEIN: MMS19 nucleotide excision rep...	[more]
A0A812D4Y3_SEPPH	6.600e-10	33.15	MMS19 nucleotide excision repair protein n=1 Tax=S...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..180 e-value: 4.6E-9 score: 38.2
IPR024687	MMS19, C-terminal	PFAM	PF12460	MMS19_C	coord: 4..116 e-value: 1.5E-15 score: 57.2
IPR039920	DNA repair/transcription protein MET18/MMS19	PANTHER	PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	coord: 3..179
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 36..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5946	contig	P-wetherbeei_contig5946:668..1575 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5946.1.1	mRNA_P-wetherbeei_contig5946.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig5946 668..1575 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig5946.1.1 ID=prot_P-wetherbeei_contig5946.1.1|Name=mRNA_P-wetherbeei_contig5946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
RASPLWQQRLFVTAFPRLTDAATAALAATAATVAPLMAMLLLAKSVPRSV
LESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDA
IVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHR
PAVARGLAAALDDRRRVVRQAAARARNDWLVLRS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR024687	MMS19_C
IPR039920	MET18/MMS19
IPR016024	ARM-type_fold