prot_P-wetherbeei_contig58586.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig58586.1.1
Unique Nameprot_P-wetherbeei_contig58586.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length57
Homology
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI001B2B1C06 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Brevibacillus reuszeri TaxID=54915 RepID=UPI001B2B1C06)

HSP 1 Score: 55.1 bits (131), Expect = 9.070e-8
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 54
            Q+AL SL++E R +I LHY+ G++ +E+ E+L+  E  +K +L +ARERL +WY
Sbjct:  113 QQALESLNEELRLLIQLHYFEGFTVREMAELLQVAEGTLKSRLVKARERLAKWY 166          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A3N5Q1V1_9BACT (RNA polymerase sigma factor n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A3N5Q1V1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-7
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL 50
            Q+A+ SLS+E R VILL Y+G  S K+I E     ES VK++LFRARERL
Sbjct:  128 QQAILSLSEEFRTVILLRYFGDMSVKDIAESENISESLVKIRLFRARERL 177          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A3A9A854_9BACT (RNA polymerase sigma factor n=1 Tax=bacterium 1xD42-87 TaxID=2320113 RepID=A0A3A9A854_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.100e-7
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    2 EALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 51
            + L +L  + + V+LLHY+ GYS KEIGE+L   ESAVK +L RARE LR
Sbjct:   83 QELYALPAKWKTVLLLHYFEGYSVKEIGEILGLSESAVKKRLQRAREALR 132          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A537WEP6_9ACTN (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537WEP6_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    3 ALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 51
            AL  L+   RA I+LHY+GGYS +E+  ++    +AV V LFRARERLR
Sbjct:   66 ALHHLTPHQRASIVLHYYGGYSLREVATIIGSTRAAVGVHLFRARERLR 114          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI0019212D61 (sigma-70 family RNA polymerase sigma factor n=1 Tax=unclassified Enterococcus TaxID=2608891 RepID=UPI0019212D61)

HSP 1 Score: 51.2 bits (121), Expect = 2.190e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    2 EALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 51
            EA  SL ++ R VI L Y+ GYS +EI ++LE  ESAVK +L RAR+ LR
Sbjct:  108 EACLSLGEDQRTVIHLFYFEGYSVREISQLLELSESAVKTRLSRARDALR 157          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A7Y1TWN2_9GAMM (RNA polymerase sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TWN2_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 2.410e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 51
            Q AL +LSDE RAVI+LHY+ G   ++I + L+  E  VK +LF AR +L+
Sbjct:   17 QSALLALSDEHRAVIVLHYFSGCDYRQISDTLDIPEKTVKSRLFSARRQLK 67          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: G6ADK7_9BACT (RNA polymerase sigma factor n=3 Tax=Prevotella TaxID=838 RepID=G6ADK7_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.830e-6
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0
Query:    3 ALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLR 51
            ALA+LS+  R  ILLHY  GY  KEI E+ E  E A+K QL R R+ L+
Sbjct:  107 ALATLSETMRTSILLHYMQGYQIKEIAEITENSEDAIKKQLSRGRQELK 155          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A1C6HI04_9FIRM (RNA polymerase sigma factor CnrH n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A1C6HI04_9FIRM)

HSP 1 Score: 50.8 bits (120), Expect = 3.400e-6
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 54
            +E L SL ++ R V+LL+Y  G+S KEI ++LE  ESA+K +L R RE+++Q Y
Sbjct:  111 KEMLQSLDEKYRIVLLLYYGEGFSIKEIAQILELTESAIKSRLSRGREQVKQEY 164          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: UPI001BD476E7 (RNA polymerase sigma factor n=3 Tax=Flagellimonas TaxID=444459 RepID=UPI001BD476E7)

HSP 1 Score: 51.2 bits (121), Expect = 3.480e-6
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERLRQWY 54
            +EAL  +S E ++++LL Y  G S KE+ E++E GESAVK++L RA+ERL + Y
Sbjct:  152 REALELVSAEEKSILLLKYQDGASIKELVELMELGESAVKMRLKRAKERLVETY 205          
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Match: A0A538AWR3_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538AWR3_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 3.940e-6
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL 50
            + ALA+L D  RAV++L    G++C EIG+ +   E AVKV+LFRAR+RL
Sbjct:  118 ERALATLPDSQRAVVVLKDVYGWTCDEIGKQMGTTEGAVKVRLFRARQRL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58586.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B2B1C069.070e-846.30sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A3N5Q1V1_9BACT1.020e-758.00RNA polymerase sigma factor n=1 Tax=Ignavibacteria... [more]
A0A3A9A854_9BACT7.100e-756.00RNA polymerase sigma factor n=1 Tax=bacterium 1xD4... [more]
A0A537WEP6_9ACTN1.070e-653.06Sigma-70 family RNA polymerase sigma factor (Fragm... [more]
UPI0019212D612.190e-654.00sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7Y1TWN2_9GAMM2.410e-649.02RNA polymerase sigma factor n=1 Tax=Woeseiaceae ba... [more]
G6ADK7_9BACT2.830e-653.06RNA polymerase sigma factor n=3 Tax=Prevotella Tax... [more]
A0A1C6HI04_9FIRM3.400e-648.15RNA polymerase sigma factor CnrH n=3 Tax=Eubacteri... [more]
UPI001BD476E73.480e-650.00RNA polymerase sigma factor n=3 Tax=Flagellimonas ... [more]
A0A538AWR3_9ACTN3.940e-652.00RNA polymerase sigma factor n=3 Tax=Actinomycetia ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 1..50
e-value: 4.5E-14
score: 51.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..56
e-value: 2.7E-17
score: 64.1
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 1..51
e-value: 1.80715E-9
score: 45.5582
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 2..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58586contigP-wetherbeei_contig58586:1..171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58586.1.1mRNA_P-wetherbeei_contig58586.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig58586 1..171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig58586.1.1 ID=prot_P-wetherbeei_contig58586.1.1|Name=mRNA_P-wetherbeei_contig58586.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
QEALASLSDEGRAVILLHYWGGYSCKEIGEMLERGESAVKVQLFRARERL
RQWYQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013249RNA_pol_sigma70_r4_t2
IPR036388WH-like_DNA-bd_sf
IPR013324RNA_pol_sigma_r3/r4-like