prot_P-wetherbeei_contig58282.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig58282.1.1
Unique Nameprot_P-wetherbeei_contig58282.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length76
Homology
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BLAST of mRNA_P-wetherbeei_contig58282.1.1 vs. uniprot
Match: A0A848H698_9BURK (Tetratricopeptide repeat protein n=2 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848H698_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 4.220e-8
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0 
Query:    4 DATVHLNLGFALLEQQQFDAARLSLGEAVRLDARN----HEAHFLLARAQRATGDAQAALQSYARVLGLQPDFGE 74
            D+ + LNLGFALLEQ +F+ A   L EA+ L   +    HEAH+LLARA RA G    AL+S    L   P+F E
Sbjct:   50 DSALRLNLGFALLEQGEFEGACRRLNEALSLRRPDEDFAHEAHYLLARAHRAAGRPAEALRSCEAALEAAPEFAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58282.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848H698_9BURK4.220e-848.00Tetratricopeptide repeat protein n=2 Tax=Ramlibact... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 39..72
e-value: 0.062
score: 22.4
coord: 5..38
e-value: 0.47
score: 19.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 39..72
score: 8.7619
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 5..38
score: 8.1719
NoneNo IPR availablePFAMPF13432TPR_16coord: 10..71
e-value: 6.0E-8
score: 33.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..76
e-value: 3.6E-15
score: 57.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58282contigP-wetherbeei_contig58282:17..244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58282.1.1mRNA_P-wetherbeei_contig58282.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig58282 11..244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig58282.1.1 ID=prot_P-wetherbeei_contig58282.1.1|Name=mRNA_P-wetherbeei_contig58282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MPGDATVHLNLGFALLEQQQFDAARLSLGEAVRLDARNHEAHFLLARAQR
ATGDAQAALQSYARVLGLQPDFGEAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf