prot_P-wetherbeei_contig57988.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig57988.1.1
Unique Nameprot_P-wetherbeei_contig57988.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length160
Homology
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7X9AFJ7_9BURK (DNA-directed RNA polymerase subunit alpha n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFJ7_9BURK)

HSP 1 Score: 233 bits (594), Expect = 4.120e-74
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATL-EKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            +FVVEPLERG+GITLG SLRRVLLSSLTGAAVTH+RIDGVLHEFST+ GV EDTTE+ILNLK+L LRL T+KRKLLRLE  GPGVVTAADI  DPEVE+LNP+LVIA L  K +RLGMDL+VA G GYVP ++Q   +Q IG+IP+DSIFSP++KVNY V+
Sbjct:   22 KFVVEPLERGYGITLGNSLRRVLLSSLTGAAVTHLRIDGVLHEFSTIPGVVEDTTEIILNLKKLRLRLMTDKRKLLRLEVSGPGVVTAADILPDPEVELLNPDLVIAHLTSKDSRLGMDLHVATGTGYVPGDRQNLADQSIGVIPIDSIFSPVVKVNYEVQ 182          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A0M2U9Y4_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridiales bacterium PH28_bin88 TaxID=1605376 RepID=A0A0M2U9Y4_9FIRM)

HSP 1 Score: 213 bits (542), Expect = 3.210e-66
Identity = 105/160 (65.62%), Postives = 134/160 (83.75%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            +FVVEPLERG+GITLG SLRR+LLSSL GAA+T V+IDGVLHEFST+ GVRED T++ILNLK LN++L T++ K++RLEA+G G V AADI  D +VE+LNPEL IATL+KG RL  ++ + +G GYVPAEK    +QVIG+IPVDS+FSP+ +VNY++E
Sbjct:   22 KFVVEPLERGYGITLGNSLRRILLSSLPGAAITSVKIDGVLHEFSTIPGVREDVTDIILNLKTLNVKLYTDEPKIVRLEAEGEGEVKAADITHDADVEILNPELHIATLDKGGRLFAEITIEKGRGYVPAEKNKRDDQVIGVIPVDSLFSPVPRVNYLIE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7C2HWY8_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2HWY8_9FIRM)

HSP 1 Score: 212 bits (540), Expect = 7.440e-66
Identity = 110/161 (68.32%), Postives = 133/161 (82.61%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            +FVVEPL+RGFG+T+G +LRRVLLSS++GAAVT V+IDGVLHEFST+ GV ED T+++LNLK L LRL T+K KLLRLE QG   VTAADIQ DPEVE++NP L +ATL++  ARL M++ V RG GYVPAE+    E VIG+IPVDSIFSP+ KVNYVVE
Sbjct:   25 KFVVEPLDRGFGVTVGNALRRVLLSSISGAAVTSVKIDGVLHEFSTIPGVVEDVTQIVLNLKELTLRLYTDKPKLLRLEVQGKKDVTAADIQPDPEVEIVNPGLHLATLDRRDARLAMEIVVERGKGYVPAERHRRSEHVIGVIPVDSIFSPVRKVNYVVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A2H5ZUJ0_9BACT (DNA-directed RNA polymerase subunit alpha n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5ZUJ0_9BACT)

HSP 1 Score: 212 bits (539), Expect = 9.380e-66
Identity = 111/161 (68.94%), Postives = 132/161 (81.99%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            + VVEPLERGFG+T+G +LRRVLLSS+ GAAVT V+I+GVLHEFST+ GV ED T+++LNLK L LRL T+K KLLRLEA+G   VTAADIQ D EVE+LNP+LVIATL++  ARL M++ V RG GYVPAEK    E VIG+IPVDSIFSP+ KVNY VE
Sbjct:   25 KVVVEPLERGFGVTVGNALRRVLLSSIPGAAVTSVKIEGVLHEFSTVPGVVEDVTQILLNLKELTLRLHTDKPKLLRLEAKGKREVTAADIQPDAEVEILNPDLVIATLDRRDARLAMEMVVERGKGYVPAEKHRKSEHVIGVIPVDSIFSPVQKVNYTVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A0T6AQZ6_9BACT (DNA-directed RNA polymerase subunit alpha n=2 Tax=Terrabacteria group TaxID=1783272 RepID=A0A0T6AQZ6_9BACT)

HSP 1 Score: 211 bits (536), Expect = 2.740e-65
Identity = 112/161 (69.57%), Postives = 130/161 (80.75%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            +FVVEPLERGFG+TLG SLRRVLLSS+ GAAVT V+I+GVLHEFST+ GV ED T++ILNLK L L+L T+K KLLRLEA G   VTAAD+Q D EVE+L P+L IATL+K  +RL M+L V RG GYVPAE+    E VIG+IPVDSIFSPI KVNY VE
Sbjct:   25 KFVVEPLERGFGVTLGNSLRRVLLSSIEGAAVTSVKIEGVLHEFSTIPGVVEDVTQIILNLKELTLKLHTDKPKLLRLEAAGKKEVTAADVQPDAEVEILTPDLHIATLDKRDSRLAMELMVERGSGYVPAERHRKSEHVIGVIPVDSIFSPIQKVNYAVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A1Y3QLJ9_9BACL (DNA-directed RNA polymerase subunit alpha n=33 Tax=Paenibacillaceae TaxID=186822 RepID=A0A1Y3QLJ9_9BACL)

HSP 1 Score: 210 bits (534), Expect = 5.040e-65
Identity = 105/160 (65.62%), Postives = 132/160 (82.50%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            RFVVEPLERG+G+TLG SLRR+LLSSL GAAVT V+IDGVLHEFST+ GV ED TE+ILNLKRL+L++ +++ K+L ++A+G GVVTA DI+ D +VE+LNPEL IATL  GARL M ++  RG GYVPAE+    +Q IG+IPVDSI++PI +VNY VE
Sbjct:   22 RFVVEPLERGYGMTLGNSLRRILLSSLPGAAVTSVQIDGVLHEFSTIPGVLEDVTEIILNLKRLSLKIHSDEEKMLEIDAEGEGVVTAGDIRADSDVEILNPELHIATLASGARLHMRIFAKRGRGYVPAERNKKDDQPIGVIPVDSIYTPITRVNYRVE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A151B1K1_9THEO (DNA-directed RNA polymerase subunit alpha n=5 Tax=Moorella TaxID=44260 RepID=A0A151B1K1_9THEO)

HSP 1 Score: 209 bits (532), Expect = 9.810e-65
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            RFVVEPLERG+GITLG SLRR+LLSSL GAAVT V+I+GVLHEFST+ GV EDTTE+ILNLK L L+L T++ K++R+EA+G G VTAADI  D +VEVLNP+L IAT+EKG RL +++ V +G GYV AEK   ++Q IGIIPVDS+FSP+ KVNY VE
Sbjct:   20 RFVVEPLERGYGITLGNSLRRILLSSLPGAAVTTVKIEGVLHEFSTIPGVVEDTTEIILNLKSLALKLHTDEPKVIRIEAEGEGEVTAADIITDADVEVLNPDLHIATVEKGGRLFIEMTVEKGRGYVSAEKNKKEDQPIGIIPVDSLFSPVHKVNYQVE 179          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7C2DMG7_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DMG7_9FIRM)

HSP 1 Score: 209 bits (531), Expect = 1.390e-64
Identity = 109/161 (67.70%), Postives = 130/161 (80.75%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            +FVVEPLERGFG+TLG +LRRVLLSS+ GAAVT V+I+GVLHEF+T+ GV ED T++ILNLK L LRL T+K KLLRLE  G   VTA DIQ D EVE+LNP+L +ATL++  ARL M++ V RG GYVPAE+    E VIG+IPVDSIFSP+ KVNYVVE
Sbjct:   21 KFVVEPLERGFGVTLGNALRRVLLSSIPGAAVTSVKIEGVLHEFTTVPGVVEDVTQIILNLKELTLRLHTDKPKLLRLEVAGKRDVTAGDIQADSEVEILNPDLHLATLDRRDARLAMEIMVERGKGYVPAERHRKSEHVIGVIPVDSIFSPVQKVNYVVE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A117KYA7_9THEO (DNA-directed RNA polymerase subunit alpha n=3 Tax=Clostridia TaxID=186801 RepID=A0A117KYA7_9THEO)

HSP 1 Score: 209 bits (531), Expect = 1.390e-64
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            RFV+EPLERG+GITLG SLRRVLLSSL GAAVT V+I+GVLHE+ST+ GV EDTT++ILNLK L L++ +++ ++LR+EA+G G VTA DI    +VE+LNP+L IATLEKG RL M++   RG GYVPAE+   +EQVIG+IPVDS+FSP+ KVNY+VE
Sbjct:   20 RFVIEPLERGYGITLGNSLRRVLLSSLPGAAVTSVKIEGVLHEYSTIPGVVEDTTDIILNLKTLALKIHSDEPQVLRIEAEGEGEVTAGDIITGADVEILNPDLHIATLEKGGRLFMEMTAQRGRGYVPAERNKKEEQVIGVIPVDSLFSPVHKVNYIVE 179          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: RPOA_CARHZ (DNA-directed RNA polymerase subunit alpha n=4 Tax=Carboxydothermus TaxID=129957 RepID=RPOA_CARHZ)

HSP 1 Score: 208 bits (530), Expect = 1.970e-64
Identity = 103/160 (64.38%), Postives = 132/160 (82.50%), Query Frame = 0
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 160
            RFV+EPLERG+GITLG S+RR+LLSSL GAAVT ++I+GVLHEFST+ GV ED TE+ILN+K L L+L  ++ ++LR+EA+G GV+TA DI   PEVE+LNP+LVIA + +G RL M++ VARG GYVPAE+    E VIG+IPVDSIFSP++KVN+ VE
Sbjct:   20 RFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIEGVLHEFSTVPGVVEDVTEIILNIKNLTLKLHGDEEQVLRIEAEGEGVITAKDIIAPPEVEILNPDLVIAHIAEGGRLFMEMTVARGRGYVPAERNKKGEHVIGVIPVDSIFSPVLKVNFQVE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFJ7_9BURK4.120e-7475.16DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A0M2U9Y4_9FIRM3.210e-6665.63DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A7C2HWY8_9FIRM7.440e-6668.32DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A2H5ZUJ0_9BACT9.380e-6668.94DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A0T6AQZ6_9BACT2.740e-6569.57DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A1Y3QLJ9_9BACL5.040e-6565.63DNA-directed RNA polymerase subunit alpha n=33 Tax... [more]
A0A151B1K1_9THEO9.810e-6568.13DNA-directed RNA polymerase subunit alpha n=5 Tax=... [more]
A0A7C2DMG7_9FIRM1.390e-6467.70DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A117KYA7_9THEO1.390e-6465.63DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
RPOA_CARHZ1.970e-6464.38DNA-directed RNA polymerase subunit alpha n=4 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availablePANTHERPTHR32108:SF0DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 1..160
NoneNo IPR availableCDDcd06928RNAP_alpha_NTDcoord: 1..160
e-value: 4.37696E-77
score: 226.582
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 1..160
e-value: 4.6E-37
score: 139.1
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 5..159
e-value: 1.1E-7
score: 31.7
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 29..149
e-value: 2.0E-44
score: 152.5
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 29..150
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 36..131
e-value: 1.3E-23
score: 83.5
IPR011773DNA-directed RNA polymerase, alpha subunitPANTHERPTHR32108DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 1..160
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 1..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57988contigP-wetherbeei_contig57988:3..482 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57988.1.1mRNA_P-wetherbeei_contig57988.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig57988 3..482 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig57988.1.1 ID=prot_P-wetherbeei_contig57988.1.1|Name=mRNA_P-wetherbeei_contig57988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGV
REDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVL
NPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFS
PIMKVNYVVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036643RNApol_insert_sf
IPR011262DNA-dir_RNA_pol_insert
IPR011773DNA-dir_RpoA
IPR036603RBP11-like