prot_P-wetherbeei_contig57880.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig57880.1.1
Unique Name	prot_P-wetherbeei_contig57880.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	102

Homology

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A0F2KQT6_9PROT (HTH cro/C1-type domain-containing protein n=15 Tax=Azospirillum TaxID=191 RepID=A0A0F2KQT6_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-22
Identity = 48/96 (50.00%), Postives = 73/96 (76.04%), Query Frame = 0

Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 96
            +  + P ++  SVAAR R RR+AL L+++E+A RSGV   +L+RFE +G +AFD+L+R+A+ LDA + F  LF +P F++LD+V+E+ PKRQRG+R
Sbjct:    4 LSLMAPGDVARSVAARARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEEFGTLFPEPEFRSLDEVIER-PKRQRGKR 98

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0015D4E412 (helix-turn-helix transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4E412)

HSP 1 Score: 91.7 bits (226), Expect = 5.170e-22
Identity = 46/96 (47.92%), Postives = 74/96 (77.08%), Query Frame = 0

Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 96
            +  + P ++  +VAAR R RR+AL L+++++A RSGV   +L+RFE +G +AFD+L+R+A+ LDA +GF  LF +P F++LD+V+++ PKRQRG+R
Sbjct:    4 LSLMAPGDVARTVAARARARRVALGLTQQDVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAVEGFGSLFPEPEFRSLDEVIDR-PKRQRGKR 98

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI000D650E8C (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. TSH100 TaxID=652764 RepID=UPI000D650E8C)

HSP 1 Score: 89.4 bits (220), Expect = 3.610e-20
Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 0

Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 96
            +  + P ++  SVA R R RR+AL L+++E+A RSGV   +L+RFE +G +AFD+L+R+A+ LDA + F  LF +P +++LD+V+++ PKRQRG+R
Sbjct:   88 LSLMTPGDVARSVAVRARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEAFGTLFPEPEYRSLDEVIDR-PKRQRGKR 182

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019969BC2 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019969BC2)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-18
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 0

Query:    6 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAK--PVFQNLDDVLEQKPKRQRGRR 96
            P EI   +A + +  RLALA+++EELA RSGV+ +S+KRFERTG I+  SL++LA+ LDA D F  LF +   +   LD +L+Q PKRQRGRR
Sbjct:    9 PQEIAQKIAVQAKESRLALAMTQEELARRSGVSLSSIKRFERTGQISLASLLQLALVLDALDPFKTLFTQGEALPATLDLLLKQTPKRQRGRR 101

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI001A95D7DA (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95D7DA)

HSP 1 Score: 81.3 bits (199), Expect = 6.610e-18
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 0

Query:    6 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 96
            P +I   VA R R+RRL L L++ EL+ R+ V   SL+RFE TG IAFD+L+R+A  LDA + F  LF +P F++ D+++ + PKRQRGRR
Sbjct:    9 PGDIAHGVAERARSRRLGLGLTQAELSERASVNIWSLRRFEATGKIAFDALIRIAFVLDAVEEFGGLFPEPEFRSPDELISR-PKRQRGRR 98

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019BC4043 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019BC4043)

HSP 1 Score: 80.5 bits (197), Expect = 1.260e-17
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 0

Query:    6 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKP--VFQNLDDVLEQKPKRQRGRRT 97
            P  I  S+A R R RRLAL L++E LA RSGV+  +LKRFERTG I+ ++L++LA  L+A DGF+ LF +P  +   LD++L +  K QRGRR+
Sbjct:    9 PKSIVRSLAERARGRRLALGLTQEGLARRSGVSLGTLKRFERTGQISLETLLQLAQVLNAFDGFNALFTEPEGLPATLDEILAEPKKPQRGRRS 102

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A7V7E9K2_9PROT (Helix-turn-helix transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E9K2_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17
Identity = 42/84 (50.00%), Postives = 61/84 (72.62%), Query Frame = 0

Query:   13 VAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 96
            V+ + RT RL+ A+++ +LAAR+G++ ASL+RFERTG  +F+ + R+A+AL A  GF  LF  PVF NLD+ L +   R+RGRR
Sbjct:    2 VSEKARTLRLSAAMTQADLAARAGISIASLRRFERTGEASFELVARIALALRAEAGFGELFNPPVFSNLDEALSRSVPRKRGRR 85

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A841GYG0_9BACT (Transcriptional regulator with XRE-family HTH domain n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GYG0_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.980e-17
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0

Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPK--RQRGRR 96
            +E   P EIT  VAAR R  RL    +++ELA R+GVT A+ +RFERTG IAFD L+++A+ LDAR GFD LF  P  ++L ++  +     RQRGRR
Sbjct:    4 VELRTPNEITRLVAARVRELRLNRGWTQQELADRAGVTLATYRRFERTGRIAFDRLLKIAVVLDARSGFDQLFTLPPARSLAELAARSEPMTRQRGRR 101

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019030D30 (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. YIM B02556 TaxID=2800326 RepID=UPI0019030D30)

HSP 1 Score: 79.0 bits (193), Expect = 4.950e-17
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 0

Query:    2 EFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKP-KRQRGRRT 97
            EF  P ++  +VA R R  RLA  L++E LAARSGV+  SLKRFE TG+I+ +SL RLAI L A DGF  LF+   F  + +VL   P KR+RGR++
Sbjct:    5 EFASPDDLCRAVAKRAREMRLAADLTQEGLAARSGVSLGSLKRFESTGAISLESLARLAITLRAEDGFGGLFSPRPFATMAEVLAVPPAKRRRGRKS 101

[Close]

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A2K2UA39_9ACTN (XRE family transcriptional regulator n=1 Tax=Enteroscipio rubneri TaxID=2070686 RepID=A0A2K2UA39_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.620e-16
Identity = 40/83 (48.19%), Postives = 62/83 (74.70%), Query Frame = 0

Query:    6 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQK 88
            P EI LS+A R R RR  L L++++L+A++G++ AS KRFE+ G IAFD+L+R+AIAL + D FD LFA+  + ++++V+  K
Sbjct:    9 PGEIALSIAERVRARRKELGLTQKQLSAKAGMSLASYKRFEQKGLIAFDALIRIAIALGSEDDFDGLFAQRGYASIEEVIRGK 91

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0F2KQT6_9PROT	2.570e-22	50.00	HTH cro/C1-type domain-containing protein n=15 Tax...	[more]
UPI0015D4E412	5.170e-22	47.92	helix-turn-helix transcriptional regulator n=1 Tax...	[more]
UPI000D650E8C	3.610e-20	46.88	helix-turn-helix domain-containing protein n=1 Tax...	[more]
UPI0019969BC2	1.550e-18	52.69	Helix-turn-helix transcriptional regulator n=1 Tax...	[more]
UPI001A95D7DA	6.610e-18	50.55	helix-turn-helix domain-containing protein n=1 Tax...	[more]
UPI0019BC4043	1.260e-17	51.06	Helix-turn-helix transcriptional regulator n=1 Tax...	[more]
A0A7V7E9K2_9PROT	1.370e-17	50.00	Helix-turn-helix transcriptional regulator n=1 Tax...	[more]
A0A841GYG0_9BACT	1.980e-17	50.00	Transcriptional regulator with XRE-family HTH doma...	[more]
UPI0019030D30	4.950e-17	51.55	helix-turn-helix domain-containing protein n=1 Tax...	[more]
A0A2K2UA39_9ACTN	1.620e-16	48.19	XRE family transcriptional regulator n=1 Tax=Enter...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 19..64 e-value: 1.8E-5 score: 24.7
IPR001387	Cro/C1-type helix-turn-helix domain	PROSITE	PS50943	HTH_CROC1	coord: 18..69 score: 9.895761
IPR001387	Cro/C1-type helix-turn-helix domain	CDD	cd00093	HTH_XRE	coord: 14..64 e-value: 1.42413E-4 score: 34.8362
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	GENE3D	1.10.260.40		coord: 5..77 e-value: 2.6E-10 score: 41.9
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	SUPERFAMILY	47413	lambda repressor-like DNA-binding domains	coord: 8..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig57880	contig	P-wetherbeei_contig57880:1..306 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig57880.1.1	mRNA_P-wetherbeei_contig57880.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig57880 1..306 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig57880.1.1 ID=prot_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGS
IAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRRTRKP
R*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001387	Cro/C1-type_HTH
IPR010982	Lambda_DNA-bd_dom_sf