prot_P-wetherbeei_contig5788.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5788.5.1
Unique Nameprot_P-wetherbeei_contig5788.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length254
Homology
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.770e-20
Identity = 85/239 (35.56%), Postives = 116/239 (48.54%), Query Frame = 0
Query:   20 PMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSG----GADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 254
            P+L L+QHLC  +PERA+ R+R++  +  LL  L    R RF VFL +LSRS K+  RGF+VE++SRLL E W W     ATD   + D    G G G+                         G    +L ++V+R +D APTVRS+AA+ L   L           +G+   A              + A +   G    G +   + PLLE +R RV D+KA VRR AV AL A+L
Sbjct:  452 PVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPW-----ATDDSSSAD----GSGEGAAVSTPRANGDADGPSPCLTD-----GGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS----GIQGRRSGYKGGA-------------FQQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAIL 659          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.350e-14
Identity = 77/244 (31.56%), Postives = 106/244 (43.44%), Query Frame = 0
Query:   20 PMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQAT-----DVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSG----GADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 254
            P+L L+QHLC  +PERA+ R+R++  +  LL  L    R RF VFL              A E++SRLL E W W   D ++     +      +   GGG G                          G    +L ++V+R +D APTVRS+AA+ L   L           +G+  AA              R A +   G    G +   + PLLE +R RV D+KA VRR AV AL A+L
Sbjct:  330 PVLTLLQHLCVSSPERAEGRARLAEGLAGLLPELEEHDRARFVVFL--------------AKELSSRLLTEDWPWATDDNSSADGSREGPAVSTLRANGGGDGPSPCLTD-------------------GGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS----GIQGRRSGYKGAA-------------FRQAVMEACGWGEAGMERGHDGPLLETIRTRVEDEKANVRRNAVPALEAIL 523          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A4D9DCZ0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.080e-14
Identity = 89/264 (33.71%), Postives = 115/264 (43.56%), Query Frame = 0
Query:    1 GRGSCGGARAAQAPSTPFLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARG---RFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSD------QATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAA-AXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 254
            GRG   G R    P+     +LA+++H+C  AP+RADVR+R+  +VL+LL  L   A     RF VFL RL RS KV  R F VEIA+  +   W W  +        A   IG+E I + GGG  +                            V L+Q   SR  DKAPTVR+RA   L   L         P    AI A A           S  + A      A       L+ ++R R +DDKA VR+ A+ AL  LL
Sbjct:  445 GRGKSKGKRRT-VPADLHTTVLAVLEHMCADAPDRADVRARLVDSVLSLLEALQRVAPELGPRFIVFLARLLRSTKVANRAFGVEIAASFVNATWAWPSATVTASGGNAAAEIGSEQI-KVGGGKEAATDAEAVKATW--------------ASLVELVQSFASRVVDKAPTVRARAMVCLSEMLLSVQEDVAPPGLRKAILALAFPEPRQGQRESSTATTAQHTEKAAADPSTQDLVCLVRSRCQDDKAVVRKAALQALEILL 692          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A8B8D1C8_CRAVI (condensin-2 complex subunit D3-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D1C8_CRAVI)

HSP 1 Score: 66.2 bits (160), Expect = 1.080e-8
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 0
Query:   18 FLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAA 171
            F  +  L+QHLCT+  +RA+ R++V+ AV+++L  +P+G  G+   +  RLS+  K+  R F ++I S LL  P    + D  T    A  +  T                                   +LL +++ RCSD APTVRSRA AA
Sbjct:  351 FSSIRTLLQHLCTKVTDRAEYRTKVAQAVVSILHEMPSGPFGKMVEWFYRLSKHSKMSNRAFTIDIVSLLLSSPE--REIDDNTPPEMASYVRHT-----------------------------------SLLGILLDRCSDAAPTVRSRAIAA 467          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI001B7DD4D3 (condensin-2 complex subunit D3 n=3 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7DD4D3)

HSP 1 Score: 65.1 bits (157), Expect = 2.610e-8
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 0
Query:   24 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALEHNT 180
            L+QH+C +  ++AD R+  + A++ LL +LP      F  +L   SR  K+P R FA+++A  LL +P       QA + +  E +                                   Q   L+QVMV  RCSDKAPTVRSRA ++L   LE  T
Sbjct:  352 LLQHICAKVTDKADYRTYGAQALVKLLSKLPCVEYAAFIKWLYNYSRHTKIPYRVFALDVAMALLEQP-----ERQADEAVPPEQV--------------------------------QFLQHRFLIQVMVLGRCSDKAPTVRSRALSSLAQCLELQT 472          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI0014258B34 (condensin-2 complex subunit D3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258B34)

HSP 1 Score: 65.1 bits (157), Expect = 2.640e-8
Identity = 44/151 (29.14%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   18 FLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRA 168
            F+    L+QHLC + P+R++ R R++S+V T+L  LP      F  +L + S++ K+  R FA+E+ S +L      +K+     V G  D  +                                     LL++++SRCSDKAPTVR++A
Sbjct:  356 FISTRVLLQHLCVKVPDRSEYRPRIASSVTTILATLPTSFNASFMQWLYKYSKNTKIGFRVFALEVVSVMLENS---QKNSHQGGVNGVPDTQQV-------------------------------TSHQVLLRMLLSRCSDKAPTVRAKA 472          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A7K8TPC5_OCEOC (CNDD3 protein (Fragment) n=1 Tax=Oceanites oceanicus TaxID=79653 RepID=A0A7K8TPC5_OCEOC)

HSP 1 Score: 63.2 bits (152), Expect = 1.150e-7
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 0
Query:   24 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALE-------------------HNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAV 247
            L+QH+CT+ P++AD R+  + A++TLL +LP      F  +L + SR+ ++  R FA+++A  LL  P     S  + D                                          +   L+QVMV  RCSD+APTVRS+A ++    LE                   H    + T TA   ++A          +P+ ++  L+ S          ++ +LRLR  D+K  VRR A+
Sbjct:  338 LLQHICTKVPDKADYRTYAAQALVTLLNKLPCIEFADFISWLYKYSRNTRIAYRVFALDVALALLDVPERNLDSSLSLD-------------------------------------HQKFLKHKFLVQVMVFGRCSDRAPTVRSKALSSFAHCLEMKAAATLESIQDLLQSSSDHTVLEANTNTASLIVSAEAMSNHPLRTLPTFKTIELTDSSNTAVLDGKEIMAMLRLRAADEKTNVRRSAL 544          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: L9KQP3_TUPCH (Condensin-2 complex subunit D3 n=4 Tax=Tupaia chinensis TaxID=246437 RepID=L9KQP3_TUPCH)

HSP 1 Score: 62.4 bits (150), Expect = 2.090e-7
Identity = 58/233 (24.89%), Postives = 103/233 (44.21%), Query Frame = 0
Query:   24 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADS--AGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 254
            L+QH+C +  ++++ R+  + +++ LL +LP      F  +  R SRSPK+P R F +++   LL  P      ++ TD   + +                                        + ++M  RCSDKAPTVRS+A ++    LE +   S    +   + ++          P   S  + +    D+  +GE  +L +LR+RVRD+K  VR+ A+  L ++L
Sbjct:  297 LLQHICAKVVDKSEYRTPAAQSLVQLLGKLPCVQYAAFIAWFYRYSRSPKIPHRIFTLDVVLALLELP------ERETDSAVSPE------------------------------HQKFLKHKFLVQEIMFDRCSDKAPTVRSKALSSFALCLESSV--SKASESILELLSSVFFHQKQTLNPLEPSVEMDVDSNGDTGGSGERCVLSMLRMRVRDEKTNVRKSAIQVLVSIL 491          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A444V4G2_ACIRT (Condensin-2 complex subunit D3 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444V4G2_ACIRT)

HSP 1 Score: 62.0 bits (149), Expect = 2.720e-7
Identity = 50/158 (31.65%), Postives = 72/158 (45.57%), Query Frame = 0
Query:   24 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALEHNT 180
            L+QH+C +  ++AD R+  + A++ LL +LP      F  +L   SR  K+P R FA+++A  LL +        QA + +  E +                                   Q   L+QVMV  RCSDKAPTVRSRA ++L   LE  T
Sbjct:  157 LLQHICAKVTDKADYRTYGAQALVKLLSKLPCVEYAAFIKWLYNYSRHTKIPYRVFALDVAMALLEQT-----ERQADEAVPPEQV--------------------------------QFLQHRFLIQVMVFGRCSDKAPTVRSRALSSLAQCLELQT 277          
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI0004F01F6C (condensin-2 complex subunit D3 n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F01F6C)

HSP 1 Score: 61.6 bits (148), Expect = 3.750e-7
Identity = 63/243 (25.93%), Postives = 100/243 (41.15%), Query Frame = 0
Query:   24 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALE------------------HNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAV 247
            L+QH+CTQ P++A+ R+  + A++TLL +LP      F  +L + SR+ K+  R FA+++                   V+G  D+ E    S                                L+QVMV  RCSDKAP VRS+A ++    LE                  H    + T  A   ++A          +P+ ++  L+ S  +       ++ VLRLR  D+K  VR+ A+
Sbjct:  334 LLQHICTQVPDKAEYRTYAAQALVTLLNKLPCTEFADFITWLYKYSRNTKIAYRVFALDV-------------------VLGLLDVPERNFDSSLSLDHQKYLKHKF------------------LVQVMVFGRCSDKAPVVRSKALSSFAHCLEMKAAATLESIQELLQTSDHTVLEANTNAASLIVSAEAMSNHPLKTLPTFKTIELTNSSDSAVLDGKEVMAVLRLRTGDEKTNVRKAAL 539          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP86_ECTSI1.770e-2035.56Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQJ4_9PHAE5.350e-1431.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DCZ0_9STRA8.080e-1433.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8B8D1C8_CRAVI1.080e-831.17condensin-2 complex subunit D3-like n=1 Tax=Crasso... [more]
UPI001B7DD4D32.610e-832.28condensin-2 complex subunit D3 n=3 Tax=Acipenseroi... [more]
UPI0014258B342.640e-829.14condensin-2 complex subunit D3-like n=1 Tax=Anneis... [more]
A0A7K8TPC5_OCEOC1.150e-726.23CNDD3 protein (Fragment) n=1 Tax=Oceanites oceanic... [more]
L9KQP3_TUPCH2.090e-724.89Condensin-2 complex subunit D3 n=4 Tax=Tupaia chin... [more]
A0A444V4G2_ACIRT2.720e-731.65Condensin-2 complex subunit D3 n=1 Tax=Acipenser r... [more]
UPI0004F01F6C3.750e-725.93condensin-2 complex subunit D3 n=1 Tax=Merops nubi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 10..254
e-value: 1.9E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..138
NoneNo IPR availablePANTHERPTHR14222:SF1CONDENSIN-2 COMPLEX SUBUNIT D3coord: 22..253
IPR026971Condensin subunit 1/Condensin-2 complex subunit D3PANTHERPTHR14222CONDENSINcoord: 22..253
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 227..254
score: 8.971701
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 25..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5788contigP-wetherbeei_contig5788:2867..3628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5788.5.1mRNA_P-wetherbeei_contig5788.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5788 2867..3628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5788.5.1 ID=prot_P-wetherbeei_contig5788.5.1|Name=mRNA_P-wetherbeei_contig5788.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp
GRGSCGGARAAQAPSTPFLPMLALVQHLCTQAPERADVRSRVSSAVLTLL
RRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQA
TDVIGAEDIGETGGGSGSGGGGSSGGGASNGGSSGTGGDIGGGGQAVALL
QVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAAAAAA
VPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAVAAL
GALL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR026971CND1/NCAPD3
IPR021133HEAT_type_2
IPR016024ARM-type_fold