prot_P-wetherbeei_contig5788.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig5788.1.1
Unique Name	prot_P-wetherbeei_contig5788.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	227

Homology

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.610e-28
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 0

Query:   52 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 143
            S+F RLG KA    GT V +SNLNFD+M  D+++LF  +GE+   +VK+DRSGRS+GEA V FA+R+DA++A+++ HMRTLD TPMH+KL GAG
Sbjct:   83 SIFTRLGGKATPSAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.360e-26
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 0

Query:   24 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHA 148
            SGP+RR    SR AR   APY Q P +PS  V  RLG   V GT+V +  LNFDVM  D+++LF  +G++L  K+ YDR+GRS G AVV F +R DA  AV + H RTLD TPMH++++  G  A +
Sbjct:   67 SGPMRRQG-ISRAARETAAPY-QRPTRPSDGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGAAES 191

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2G076_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G076_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.530e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 0

Query:   52 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 141
            S+  RLGAK  +  GTKV++ NL F+V++ +L++LF  +GE+LD KVKYDR+GRSLGE  +TFA+++DAV AV+  H R LD  PM +KL G
Sbjct:  118 SILSRLGAKMSDASGTKVTVGNLGFEVLEAELKELFQTVGELLDAKVKYDRTGRSLGEGEITFARQSDAVAAVKTFHARALDGQPMQVKLSG 209

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.380e-21
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 0

Query:   24 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 143
            SGP+RR    SR AR   APY Q P +P+  V  RLG   V GT+V +  LNFDVM  D+++LF  +G++L  K+ +DR+GRS G A+V F +R DA  AV + H RTLD TPM ++++  G
Sbjct:   67 SGPMRRQG-ISRVARETAAPY-QRPTRPADGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGG 186

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024UUL3_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUL3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.210e-20
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 0

Query:   25 GPVRRNAPASRQARAAVAPYAQEP--------------RKPSVFLRLGAKAVE---GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAI 188
            GPVRRN P + + R    PY+++               ++ S+  RLG +      G K+ + NL FDV+++DL++LF  +G+V   ++ YD+SGRS G A V FA+RNDA +AV+    R LDD  + + L  A +      SGGG G  R    + ++  R+S   G NVR+G+FGTA+
Sbjct:   36 GPVRRNRPNTGRGRRNAEPYSRKNDSDDDMGDSSGKSGKRASILSRLGGRVSNDDAGHKIFVQNLKFDVLEDDLKELFGTVGKVTKAEIVYDKSGRSKGLARVWFARRNDAEQAVKRYDGRLLDDQALKIALDDAPS------SGGGYGNPR----NTSSSQRRSNNDGNNVRQGVFGTAL 206

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A1V9Y6Q6_9STRA (RRM domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6Q6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.540e-18
Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = 0

Query:   17 KPKQQASSGPVRRNAPASRQARAAVAPYA-----------QEPRKP------SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAIAG 190
            K ++++ +GPVRRN P + + R    PY+           +E  KP      S+  R+G KA E  G KV +SNL FDV+++D+++LF+ +G+V+  ++ YDRSGRS G+A V F+ +  A  AV +   RTLD+  M + L    N++++N                       +    NVR G+FGTA+ G
Sbjct:   24 KGRKESGAGPVRRNRPNAGRGRRDGTPYSRKGDDGDVDMDEESNKPPRGGRTSILSRIGGKAQEDIGHKVFVSNLKFDVLEDDIKELFSTVGKVVKHEIIYDRSGRSKGQARVWFSNKRAAEAAVTKYDGRTLDNQAMKITLDDGNNQSNSN----------------------KKQDSNNVRSGLFGTALQG 194

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A836CLS9_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.480e-16
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   50 KPSVFLRLGA----KAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 141
            K S+  RLG     K V GT+V  SNLN DV   D++++   +G+V D++++YD +GRS G+A+VT+A+  DA +AV  LH+RTLD TPM +K+LG
Sbjct:  123 KSSILSRLGTQRDTKKVFGTQVGFSNLNHDVDLEDIKEVAATVGQVNDVEMQYDSTGRSEGKAIVTYARYLDAQEAVASLHLRTLDGTPMQVKMLG 218

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024GSE9_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSE9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.860e-16
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 0

Query:   43 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 139
            P  +E +K S+  RLG       GTK+ + NL FD++++D+ +LFN +G+V   ++ YDRSGRS G A V F +R+DA KA+++   RTLD  PM + L
Sbjct:  106 PVPRENKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFNTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: F0WLE1_9STRA (Uncharacterized protein AlNc14C143G7329 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLE1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.060e-16
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0

Query:   43 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 139
            P ++E +K S+  RLG       GTK+ + NL FD++++D+ +LF  +G+V   ++ YDRSGRS G A V F +R+DA KA+++   RTLD  PM + L
Sbjct:  106 PISKESKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFGTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204

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BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: G4YGH8_PHYSP (RRM domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YGH8_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 7.960e-16
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 0

Query:   52 SVFLRLGAK--AVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 139
            S+  RLG K  A  GTK+ + NL FD+++ ++ +LF  +GEV   ++ YDRSGRS G A V FA+R+DA KA+++   RTLD  PM + L
Sbjct:   38 SILSRLGGKDAASPGTKILVKNLKFDILEEEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQISL 127

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2V561_9STRA	4.610e-28	58.51	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A6H5KWS3_9PHAE	8.360e-26	49.61	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S2G076_9STRA	3.530e-22	54.35	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
D8LLT1_ECTSI	9.380e-21	47.54	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A024UUL3_9STRA	1.210e-20	37.02	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A1V9Y6Q6_9STRA	5.540e-18	33.68	RRM domain-containing protein n=1 Tax=Thraustothec...	[more]
A0A836CLS9_9STRA	1.480e-16	47.92	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A024GSE9_9STRA	1.860e-16	43.43	RRM domain-containing protein n=1 Tax=Albugo candi...	[more]
F0WLE1_9STRA	3.060e-16	42.42	Uncharacterized protein AlNc14C143G7329 n=1 Tax=Al...	[more]
G4YGH8_PHYSP	7.960e-16	46.67	RRM domain-containing protein n=3 Tax=Phytophthora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 66..138 e-value: 1.0E-13 score: 61.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 68..135 e-value: 1.9E-14 score: 53.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 65..142 score: 14.47054
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..161 e-value: 2.1E-19 score: 71.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR23003:SF3	FI21236P1	coord: 62..168 coord: 63..176
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 62..168
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 63..176
None	No IPR available	CDD	cd12418	RRM_Aly_REF_like	coord: 65..139 e-value: 5.46159E-28 score: 99.5967
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..164

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5788	contig	P-wetherbeei_contig5788:3..831 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5788.1.1	mRNA_P-wetherbeei_contig5788.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig5788 2..831 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig5788.1.1 ID=prot_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
PVQQQKATPRPASAQSKPKQQASSGPVRRNAPASRQARAAVAPYAQEPRK
PSVFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDR
SGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANG
SGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAIAGGGGGDGGGGR
GNGGRGGGGAHTRPSDDVHFSVTLDGK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf