prot_P-wetherbeei_contig57773.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig57773.1.1
Unique Nameprot_P-wetherbeei_contig57773.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length169
Homology
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A344PFA2_9PHAE (DNA-directed RNA polymerase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFA2_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 7.670e-95
Identity = 158/169 (93.49%), Postives = 165/169 (97.63%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISI IEDLR PP+KIDLMRK+SLDA LTE+QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLMSDPSGRIIDRAIG+NFREGLSITDYIISSYGARKGLVDTA+KTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISIGIEDLRIPPIKIDLMRKASLDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPSGRIIDRAIGSNFREGLSITDYIISSYGARKGLVDTAVKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: D1J789_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J789_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 3.880e-94
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDLR PPVKIDLMR++S DA LTE+QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDPSGRIIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPVKIDLMRRASFDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPSGRIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A6B7EYT5_9PHAE (DNA-directed RNA polymerase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYT5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.580e-92
Identity = 156/169 (92.31%), Postives = 162/169 (95.86%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKS IS+SIEDLR PP KI LMR++SLDA LTE QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGN+SQVRQL+GMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSAISLSIEDLRIPPAKIALMRRASLDAFLTEVQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNLSQVRQLVGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A1I9LV94_9PHAE (DNA-directed RNA polymerase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV94_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.750e-90
Identity = 151/169 (89.35%), Postives = 163/169 (96.45%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDL+ PPVKI+LM+++S DA+LTE+QAKNGEITEVERFQR+I+IWN+TSEELKERLIEFFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLM DPSGRIID+AI  NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLKVPPVKIELMKRASSDAILTEAQAKNGEITEVERFQRLIYIWNSTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMCDPSGRIIDKAIAANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0F804_9PHAE (DNA-directed RNA polymerase n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F804_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.130e-88
Identity = 150/169 (88.76%), Postives = 159/169 (94.08%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDLR PP KI LM+ +S D  L ESQA NGEITEVERFQRII+IWN+TSEELKERLI+FFKKNDPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPAKIPLMKIASQDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKERLIDFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: D1GJH4_FUCVE (DNA-directed RNA polymerase subunit beta'' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH4_FUCVE)

HSP 1 Score: 284 bits (727), Expect = 3.770e-86
Identity = 146/169 (86.39%), Postives = 157/169 (92.90%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDLR PPVK  LM+ ++ D  +TES+A NGEITEVERFQ+II+IWN TSEELKERLI+FFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLMSDP+G+IIDRAI  NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   52 EYATKSGISISIEDLRIPPVKTTLMKNATRDVFITESKANNGEITEVERFQKIIYIWNNTSEELKERLIDFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDRAITANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 220          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A0R6M448_UNDPI (DNA-directed RNA polymerase n=32 Tax=Laminariales TaxID=2886 RepID=A0A0R6M448_UNDPI)

HSP 1 Score: 283 bits (724), Expect = 9.680e-86
Identity = 147/169 (86.98%), Postives = 156/169 (92.31%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDL+  P K  LM  +S D  L ESQA NGEITEVERFQRII+IWN+TSEELK+RLIEFFKKNDPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLKISPAKSALMEIASNDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKDRLIEFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0FAT1_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT1_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 3.460e-85
Identity = 145/169 (85.80%), Postives = 156/169 (92.31%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDLR PP K  LM+ ++ D   TES+A NGEITEVERFQ++I+IWNTTSEELKERLI+F KK DPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKG+VDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPAKTVLMQNATEDVFTTESRANNGEITEVERFQKLIYIWNTTSEELKERLIDFLKKTDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPNGQIIDRAIGANFREGLSITDYIISSYGARKGIVDTAIKTADSGYLTRRLVEVAQSIIIS 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0F9S6_9PHAE (DNA-directed RNA polymerase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9S6_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 3.500e-85
Identity = 144/169 (85.21%), Postives = 155/169 (91.72%), Query Frame = 0
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            EYATKSGISISIEDL+ PP KI LM  +S    L ESQA NGEITEVERFQRIIHIW+TTSEELKERL++FFKK DPLNSVYIMAFSGARGNI QVRQL+GMRGLM+DP+G+IID+AIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIII+
Sbjct:   47 EYATKSGISISIEDLKIPPAKISLMESASHAISLAESQASNGEITEVERFQRIIHIWSTTSEELKERLVDFFKKRDPLNSVYIMAFSGARGNIEQVRQLVGMRGLMADPNGKIIDKAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIN 215          
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8E5F971_9PHAE (DNA-directed RNA polymerase n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F971_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 6.530e-85
Identity = 141/168 (83.93%), Postives = 155/168 (92.26%), Query Frame = 0
Query:    2 YATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 169
            YATKSGISIS+EDLRTPP+K+ LM+K+S   + T+ QA +GEITEVERFQ+IIH+WNTTS ELK+RL+ FFKK DPLNSVYIMAFSGARGN+ QVRQL+GMRGLMSDPSG IIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQ IIIS
Sbjct:   48 YATKSGISISLEDLRTPPIKVPLMQKASTKIIQTDDQANHGEITEVERFQKIIHVWNTTSTELKDRLVTFFKKADPLNSVYIMAFSGARGNLEQVRQLVGMRGLMSDPSGNIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQRIIIS 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A344PFA2_9PHAE7.670e-9593.49DNA-directed RNA polymerase n=5 Tax=Scytosiphonace... [more]
D1J789_ECTSI3.880e-9493.49DNA-directed RNA polymerase n=2 Tax=Ectocarpus sil... [more]
A0A6B7EYT5_9PHAE2.580e-9292.31DNA-directed RNA polymerase n=1 Tax=Cladosiphon ok... [more]
A0A1I9LV94_9PHAE1.750e-9089.35DNA-directed RNA polymerase n=1 Tax=Pleurocladia l... [more]
A0A8F0F804_9PHAE1.130e-8888.76DNA-directed RNA polymerase n=2 Tax=Laminariales T... [more]
D1GJH4_FUCVE3.770e-8686.39DNA-directed RNA polymerase subunit beta'' n=3 Tax... [more]
A0A0R6M448_UNDPI9.680e-8686.98DNA-directed RNA polymerase n=32 Tax=Laminariales ... [more]
A0A8F0FAT1_9PHAE3.460e-8585.80DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
A0A8F0F9S6_9PHAE3.500e-8585.21DNA-directed RNA polymerase n=1 Tax=Chorda asiatic... [more]
A0A8E5F971_9PHAE6.530e-8583.93DNA-directed RNA polymerase n=1 Tax=Phaeophyceae s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 9..149
e-value: 1.9E-49
score: 169.3
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 44..120
e-value: 1.2E-17
score: 63.8
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 125..168
e-value: 2.8E-17
score: 63.0
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..169
NoneNo IPR availablePANTHERPTHR19376:SF58DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 1..169
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57773contigP-wetherbeei_contig57773:3..509 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57773.1.1mRNA_P-wetherbeei_contig57773.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig57773 3..509 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig57773.1.1 ID=prot_P-wetherbeei_contig57773.1.1|Name=mRNA_P-wetherbeei_contig57773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERF
QRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLI
GMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTA
DSGYLTRRLVEVAQSIIIS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038120Rpb1_funnel_sf
IPR007083RNA_pol_Rpb1_4
IPR007081RNA_pol_Rpb1_5
IPR045867DNA-dir_RpoC_beta_prime