prot_P-wetherbeei_contig56367.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig56367.1.1
Unique Nameprot_P-wetherbeei_contig56367.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length170
Homology
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: UPI001C3C7F50 (RluA family pseudouridine synthase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C7F50)

HSP 1 Score: 289 bits (740), Expect = 3.770e-96
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+GGTLVHGLLAHAIAGG+DPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLR+R +ER Y  LVHG TPPAL +DRPIGRDR++RTR AID V+GREAVTH+R LE LGR +LLE RLETGRTHQIRVHLESVGHPVVGDRVYGRRE  LGL+RQFLHAARLAFPHP
Sbjct:  100 HAGGTLVHGLLAHAIAGGADPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRDRLIERHYTVLVHGRTPPALTVDRPIGRDRKVRTRQAIDVVDGREAVTHLRLLEPLGRVSLLEARLETGRTHQIRVHLESVGHPVVGDRVYGRREETLGLDRQFLHAARLAFPHP 269          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: UPI001C3DD157 (RluA family pseudouridine synthase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DD157)

HSP 1 Score: 288 bits (737), Expect = 1.040e-95
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+GGTLVHGLLAHA+AGG+DP+RPGIVHRLDRDTSGLLVVARSERAHRRLQR+LR+R +ER YLALVHGA PPAL IDRPIGRDRR RTRMAID  EGREAVTHVR LE LGR TL+EVRLETGRTHQIRVHLE+ GHPVVGDRVYGRR+ +LGLERQFLHAARLAFPHP
Sbjct:  103 HAGGTLVHGLLAHAVAGGADPSRPGIVHRLDRDTSGLLVVARSERAHRRLQRLLRDRRVERHYLALVHGAPPPALTIDRPIGRDRRNRTRMAID-AEGREAVTHVRVLERLGRMTLVEVRLETGRTHQIRVHLEAAGHPVVGDRVYGRRQPDLGLERQFLHAARLAFPHP 271          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A7W0P514_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0P514_9ACTN)

HSP 1 Score: 200 bits (508), Expect = 4.420e-61
Identity = 113/172 (65.70%), Postives = 125/172 (72.67%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            HS GTLVHGLL HA+AGG  P RPGIVHR+DRDTSGLLVVARSE AHRRLQR++R RE+ER Y ALV G  P + R  I+ PIGRDR   TR ++D    R AVTH    E L R  LL VRLETGRTHQIRVHL ++  PV GD VYG    +LGL RQFLHAARL F HP
Sbjct:  103 HSSGTLVHGLLGHAVAGGQAPHRPGIVHRIDRDTSGLLVVARSEEAHRRLQRLVRHREIERAYQALVRGR-PRSHRGKIEAPIGRDRADPTRQSLDTATPRSAVTHFEVAELLARHALLTVRLETGRTHQIRVHLRAIELPVAGDPVYGVA-GDLGLRRQFLHAARLTFAHP 272          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538CKG3_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CKG3_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 6.360e-60
Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+ GTLVHGLLAH +AGG +  RPGIVHRLDRDTSGL+VVARSE AHRRLQ ++R RELER YLALV G       RI+  IGRDRR   R ++D    REAVTH   +E L R  LL+VRLETGRTHQIRVHL ++G PV GD VYGR    LGLERQFLHAA LAF HP
Sbjct:  102 HATGTLVHGLLAHDVAGG-EADRPGIVHRLDRDTSGLMVVARSEEAHRRLQAVVRRRELERRYLALVVGRPRSRSGRIEASIGRDRRDPMRHSLDTETPREAVTHFELVELLPRHALLDVRLETGRTHQIRVHLSAIGLPVAGDLVYGR-PLELGLERQFLHAASLAFTHP 270          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A537TL05_9ACTN (Pseudouridine synthase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537TL05_9ACTN)

HSP 1 Score: 195 bits (496), Expect = 1.030e-59
Identity = 111/171 (64.91%), Postives = 126/171 (73.68%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPP-ALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+GGTLVHGLL HAIAGG +P RPG+VHRLDRDTSGLLVVARSE AHRRLQ +LR R L R Y+ALV G     A RI+  IGRDR   TR++++    REAVT    +E L    L+ VRLETGRTHQIRVHL ++  PV GD VYG    +LGLERQFLHAARLAF HP
Sbjct:   73 HAGGTLVHGLLGHAIAGGDEPDRPGVVHRLDRDTSGLLVVARSEDAHRRLQGLLRRRALTREYVALVRGRPRSRAGRIEAAIGRDRHDPTRVSLETDVPREAVTGFELVELLPEHALIRVRLETGRTHQIRVHLSAIDLPVAGDPVYGV-PGDLGLERQFLHAARLAFEHP 242          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538DQ42_9ACTN (Pseudouridine synthase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DQ42_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 2.200e-59
Identity = 113/171 (66.08%), Postives = 126/171 (73.68%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            HS GTLVHGLLAH  AGG D  RPGIVHRLDRDTSGL+VVARS+ +HRRLQ ++R R LER Y ALV G       RI+ PIGRDRR   R ++D    R+AVTH   +E L R+ LL+VRLETGRTHQIRVHL S+  PV GD VYGR    LGLERQFLHAARLAF HP
Sbjct:  112 HSSGTLVHGLLAHDAAGGDDD-RPGIVHRLDRDTSGLMVVARSDESHRRLQALVRRRALERHYRALVVGRPRSRSGRIEAPIGRDRRDPLRHSLDTETPRDAVTHFEVVELLPRYALLDVRLETGRTHQIRVHLASIDLPVAGDPVYGRPH-ELGLERQFLHAARLAFEHP 280          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A419GWK3_9ACTN (Pseudouridine synthase n=1 Tax=Gaiellales bacterium TaxID=2093372 RepID=A0A419GWK3_9ACTN)

HSP 1 Score: 195 bits (496), Expect = 3.120e-59
Identity = 105/181 (58.01%), Postives = 127/181 (70.17%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLED----------LGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+ GTLVHGLLAH+IAGG  P RPGIVHRLD+DTSGL++VA+SE +HR L  ML   E+ERTYLALVHG        ++ P+GRD   R +M++    GR+AVTH R  E            G ++LLEVRLETGRTHQIRVHL ++GHPV GD  YGRR+  LG+ RQFLH+ RL F HP
Sbjct:  101 HARGTLVHGLLAHSIAGGDSPRRPGIVHRLDKDTSGLMIVAKSEESHRLLVDMLAGHEVERTYLALVHGVFETKEGTVEAPVGRDAARRQQMSVAARGGRDAVTHFRVAESWPADSRERDRAGGYSLLEVRLETGRTHQIRVHLAAIGHPVAGDATYGRRKDTLGVGRQFLHSHRLRFGHP 281          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A7C1KQ48_9ACTN (Pseudouridine synthase n=2 Tax=Bacteria TaxID=2 RepID=A0A7C1KQ48_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 1.060e-58
Identity = 107/185 (57.84%), Postives = 121/185 (65.41%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVR--------------RLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H  GTLVHGLLAH +AGG  P RPGIVHRLD+DTSGLLVVAR +  HR L  MLR  ++ERTY+ALVHG        ID P+GRD   R RM++    GR AVTH R              R E     +LLEVRL+TGRTHQIRVHLE++GHPV GD  Y RR   LG+ RQFLHA RL F HP
Sbjct:  112 HDHGTLVHGLLAHQVAGGESPHRPGIVHRLDKDTSGLLVVARDDATHRLLVEMLRRHQIERTYIALVHGYFETREGTIDAPVGRDAANRQRMSVAGTAGRAAVTHFRVIRSWAGDGSGRGRRKEPGAGLSLLEVRLDTGRTHQIRVHLEAIGHPVAGDTTYSRRRDRLGIGRQFLHATRLTFSHP 296          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538H4T7_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538H4T7_9ACTN)

HSP 1 Score: 193 bits (491), Expect = 1.260e-58
Identity = 112/172 (65.12%), Postives = 128/172 (74.42%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+ GTLVHGL+   +AGG +  RPGIVHRLDRDTSGLLVVARS  AHRRL+R++R R+LER YLALV G  P + R  I+ PIGRDR   TR ++D    R+AVTH   +E L R  LL VRLETGRTHQIRVHL ++  PV GD VYGR    LGLERQFLHAARLAFPHP
Sbjct:  101 HTTGTLVHGLVG--VAGGGEEGRPGIVHRLDRDTSGLLVVARSTEAHRRLERLVRRRKLERRYLALVCGR-PRSRRGTIEAPIGRDRHDPTRQSLDTATPRDAVTHFEVVELLPRHALLGVRLETGRTHQIRVHLAAIDLPVAGDPVYGR-PGELGLERQFLHAARLAFPHP 268          
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538HY88_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HY88_9ACTN)

HSP 1 Score: 193 bits (491), Expect = 1.410e-58
Identity = 114/172 (66.28%), Postives = 127/172 (73.84%), Query Frame = 0
Query:    1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 170
            H+ GTLVHGLLAH  AGG D  RPGIVHRLDRDTSGL+VVARSE AHRRLQ ++R  EL+R YLALV G  P + R  I+ PIGRDRR   R ++     REAVTH   +E L R  LL+VRLETGRTHQIRVHL +V  PV GD +YGR    LGLERQFLHAARL FPHP
Sbjct:  103 HAEGTLVHGLLAHDAAGG-DAERPGIVHRLDRDTSGLMVVARSEEAHRRLQGLVRRHELDRHYLALVVGR-PRSRRGQIEAPIGRDRRDPLRQSLSTDSPREAVTHFEIVELLPRHALLDVRLETGRTHQIRVHLGAVDLPVAGDPLYGRPH-ELGLERQFLHAARLGFPHP 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C7F503.770e-9685.29RluA family pseudouridine synthase n=1 Tax=Miltonc... [more]
UPI001C3DD1571.040e-9586.47RluA family pseudouridine synthase n=1 Tax=Miltonc... [more]
A0A7W0P514_9ACTN4.420e-6165.70Pseudouridine synthase n=1 Tax=Actinomycetia bacte... [more]
A0A538CKG3_9ACTN6.360e-6066.67Pseudouridine synthase n=1 Tax=Actinomycetia bacte... [more]
A0A537TL05_9ACTN1.030e-5964.91Pseudouridine synthase (Fragment) n=1 Tax=Actinomy... [more]
A0A538DQ42_9ACTN2.200e-5966.08Pseudouridine synthase n=2 Tax=Actinomycetia bacte... [more]
A0A419GWK3_9ACTN3.120e-5958.01Pseudouridine synthase n=1 Tax=Gaiellales bacteriu... [more]
A0A7C1KQ48_9ACTN1.060e-5857.84Pseudouridine synthase n=2 Tax=Bacteria TaxID=2 Re... [more]
A0A538H4T7_9ACTN1.260e-5865.12Pseudouridine synthase n=1 Tax=Actinomycetia bacte... [more]
A0A538HY88_9ACTN1.410e-5866.28Pseudouridine synthase n=1 Tax=Actinomycetia bacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..60
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 1..170
e-value: 1.2E-58
score: 200.2
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 7..170
e-value: 3.4E-45
score: 152.0
NoneNo IPR availablePANTHERPTHR21600:SF57RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Dcoord: 2..170
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 2..170
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 19..134
e-value: 2.6E-29
score: 102.4
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 1..167
e-value: 2.58683E-65
score: 196.019
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 27..41
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 7..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56367contigP-wetherbeei_contig56367:7..516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56367.1.1mRNA_P-wetherbeei_contig56367.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig56367 7..516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig56367.1.1 ID=prot_P-wetherbeei_contig56367.1.1|Name=mRNA_P-wetherbeei_contig56367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRL
QRMLRERELERTYLALVHGATPPALRIDRPIGRDRRLRTRMAIDPVEGRE
AVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRRE
ANLGLERQFLHAARLAFPHP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf