prot_P-wetherbeei_contig56305.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig56305.2.1
Unique Nameprot_P-wetherbeei_contig56305.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length55
Homology
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A6M0JU05_9GAMM (Helix-turn-helix domain-containing protein n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0JU05_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 5.390e-10
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    3 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            +P+ ++G +Y    +VA+ V VSRQTLWRWRQD  +P G K+R+  V++T  E
Sbjct:    1 MPLTIKGLTYYTAADVAERVEVSRQTLWRWRQDGKIPLGHKYRNRHVVFTPAE 53          
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A7C1YJZ2_9GAMM (DNA-binding protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A7C1YJZ2_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 7.110e-10
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    3 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            +PI +    YL  T++   VGV+RQTLWRWRQ+  VP G ++R+ QV+++ EE
Sbjct:    5 MPININDVRYLTVTDLLKEVGVTRQTLWRWRQEGKVPTGHRYRNRQVVFSPEE 57          
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A2T6NIW0_9GAMM (HTH_17 domain-containing protein n=1 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2T6NIW0_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.520e-9
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    5 IELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            IE+ G +YL  +E+   VGV+RQTLWRWRQ+  VP G ++R   V+++ +E
Sbjct:   19 IEINGINYLSASELLKTVGVTRQTLWRWRQEGKVPAGHRYRGRHVVFSPDE 69          
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A259TU68_9BACT (HTH merR-type domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TU68_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-9
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            +P  +   ++L  + VADLVG+SRQ+LWRW++  LVP G+++R  ++ YT +E
Sbjct:    1 MPTVVHDTTFLTASMVADLVGISRQSLWRWKKAGLVPAGRRYRGRELFYTRDE 53          
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A2E6QC02_9PROT (HTH_17 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QC02_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-9
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    7 LQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            + G  YL ++EVA+ + +SRQTLWRWRQD  +P G ++R  QV+++  E
Sbjct:    5 IDGAVYLSESEVAERLDISRQTLWRWRQDGKIPQGHRYRGRQVLFSKTE 53          
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A7X4FJ74_9BACT (Helix-turn-helix domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FJ74_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.480e-8
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    3 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 55
            +PI++   +Y   TEV   + VSRQTLWRWR +  VP G ++R+  V++T++E
Sbjct:    1 MPIQIDNVTYYSATEVIGDLNVSRQTLWRWRNEGKVPAGHRYRNRSVLFTSDE 53          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6M0JU05_9GAMM5.390e-1047.17Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7C1YJZ2_9GAMM7.110e-1047.17DNA-binding protein n=1 Tax=Sedimenticola sp. TaxI... [more]
A0A2T6NIW0_9GAMM2.520e-947.06HTH_17 domain-containing protein n=1 Tax=gamma pro... [more]
A0A259TU68_9BACT3.330e-943.40HTH merR-type domain-containing protein n=1 Tax=Ru... [more]
A0A2E6QC02_9PROT3.330e-946.94HTH_17 domain-containing protein n=1 Tax=Rhodospir... [more]
A0A7X4FJ74_9BACT1.480e-843.40Helix-turn-helix domain-containing protein n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 3..49
e-value: 7.7E-6
score: 28.1
NoneNo IPR availablePFAMPF13384HTH_23coord: 13..34
e-value: 1.2E-5
score: 25.1
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 13..45
e-value: 3.04518E-4
score: 32.525
IPR009061Putative DNA-binding domain superfamilySUPERFAMILY46955Putative DNA-binding domaincoord: 12..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56305contigP-wetherbeei_contig56305:353..517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56305.2.1mRNA_P-wetherbeei_contig56305.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig56305 353..517 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig56305.2.1 ID=prot_P-wetherbeei_contig56305.2.1|Name=mRNA_P-wetherbeei_contig56305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
RDVPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVI
YTAEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR009061DNA-bd_dom_put_sf