prot_P-wetherbeei_contig5467.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5467.2.1
Unique Nameprot_P-wetherbeei_contig5467.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length114
Homology
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.450e-45
Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +RGLMRQHIDS+DYFVNV+I KIV  + NREVLS+ DPKFFL+YT + VGTP I ED  + +   ITPFQCRLRDCTYSAP++VNV+Y RGR +V+K N+ IGRIP+ML SC+C
Sbjct:   90 LRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTGITVGTPCIEEDDYTVKS--ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKC 201          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 160 bits (404), Expect = 3.160e-43
Identity = 78/114 (68.42%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +RGLMRQHIDSFD+FVN EIK IV   SNRE+ SEADPKF+LRYTDV VG PS+ +D+       +TPFQCRLRDCTYSAP+ V+V+Y RGR +V K+ V IGRIPIMLRSC+C
Sbjct:   58 LRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEADPKFWLRYTDVHVGEPSVDDDAYVSSR--VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKC 169          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.520e-42
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +RGLMRQHIDSFD+FV  E+K+IV + S  E+ S+ DPKF+LRYTD  VG PS+ ED+ +      TPFQCRLRDCTYSAP+YVNV+Y RGR +V KK V +GR+PIMLRS +C
Sbjct:   76 LRGLMRQHIDSFDHFVTTEMKQIVQSPSACEIRSDHDPKFYLRYTDCWVGEPSVEEDAYAFS--QATPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKC 187          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.570e-41
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +RGLM+QHIDSFDYFVN+E+K+IV + S  E+ SE DPKF+LRYTD  VG PS+ EDS +      +PFQCRLRDCTYSAP+YVNV+Y RGR +V KK V +GR+PIMLRS +C
Sbjct:  312 LRGLMKQHIDSFDYFVNIEMKQIVQSPSACEIRSEHDPKFYLRYTDCWVGEPSVEEDSYAFT--QASPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVVVGRMPIMLRSSKC 423          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.180e-41
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            MRGLM QHIDSFDYFVNV+IK IV   SNREV S+ DP+++LRYT+V VG P I +D+   +  P TPF+CRLRDCTY AP+ V++K+ RG  +V+   VPIGRIPIMLRSC+C
Sbjct:   33 MRGLMTQHIDSFDYFVNVDIKNIVNAASNREVRSDVDPRWWLRYTNVSVGEPEIFDDA--HQRTPATPFECRLRDCTYYAPIIVSIKFTRGNQIVNMSGVPIGRIPIMLRSCKC 144          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A448ZSN6_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSN6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.570e-40
Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            MR LMRQHIDSFD+FVNVE+K+IV + S RE+ SE DP F+LRYTD  +G PS+ EDS +      TPFQCRLRDCTYSAP+YVNV+Y RGR +V K+ V IG++PIMLRS +C
Sbjct:  151 MRSLMRQHIDSFDHFVNVEMKQIVQSPSAREIRSEHDPNFYLRYTDCWLGEPSVEEDSYATS--TATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKC 262          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.140e-40
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +RGL+ QHI+SF+YFVNVEIKKIV  QSN EV SE DPKF+LRYT+V VG P++ + +  +    ITPF+CRLRDCTYSA +YV+V+Y R   +V K+ +PIGRIPIMLRSC+C
Sbjct:   32 LRGLITQHIESFNYFVNVEIKKIVAAQSNFEVRSEQDPKFYLRYTNVYVGEPTVDDPNFVESS--ITPFECRLRDCTYSAMIYVDVRYTRNNKIVVKQKIPIGRIPIMLRSCKC 143          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.380e-39
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +R LMRQHIDSFDY VNVE+K+IV + S RE+ SE DP F+LRYTD  +G PS+ EDS +      TPFQCRLRDCTYSAP+YVNV+Y RGR +V K+ V IG++PIMLRS +C
Sbjct:   98 IRSLMRQHIDSFDYLVNVELKQIVQSPSAREIRSEHDPNFYLRYTDCWLGEPSLEEDSYAVS--TATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKC 209          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: F0J944_AMBVA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amblyomma variegatum TaxID=34610 RepID=F0J944_AMBVA)

HSP 1 Score: 139 bits (349), Expect = 2.120e-39
Identity = 64/114 (56.14%), Postives = 88/114 (77.19%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            MRGL+R HIDSF++F+NVEIK+I+  ++N  + S+ADP+F+L+Y D+ VGTP++ ED T   GRP TP +CRLRD TYSAP+ V+++Y RG+  V +   PIGR+PIMLRS  C
Sbjct:   38 MRGLVRHHIDSFNHFINVEIKEIM--RANERITSDADPQFYLKYLDIHVGTPNVQEDFTV--GRPTTPHECRLRDMTYSAPITVDIEYTRGQERVMRSGFPIGRMPIMLRSANC 147          
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A1Z5KRH4_FISSO (DNA-directed RNA polymerase subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH4_FISSO)

HSP 1 Score: 147 bits (372), Expect = 6.520e-39
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 114
            +R L+RQH+DSFDYFV  E+++IV + S RE+ SE DPKF+LRY    VG PSI EDS + +   ITPF+CRLRDCTYSAP+YVNV+Y RGR  V K+NV IGRIPIMLRS +C
Sbjct:  109 LRSLLRQHVDSFDYFVETEMQQIVKSASAREIRSEHDPKFYLRYEACWVGEPSIEEDSYTMKS--ITPFECRLRDCTYSAPIYVNVRYIRGRQPVVKRNVMIGRIPIMLRSKKC 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE4.450e-4567.54DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
I2CNY0_NANGC3.160e-4368.42DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S2XTK8_9STRA2.520e-4263.16DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S4I9T1_9STRA4.570e-4164.91DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A7S2WH87_9STRA6.180e-4163.16DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A448ZSN6_9STRA1.570e-4064.91DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A6U4JF41_9STRA2.140e-4063.16DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A1E7EUM7_9STRA1.380e-3964.04DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
F0J944_AMBVA2.120e-3956.14DNA-directed RNA polymerase (Fragment) n=1 Tax=Amb... [more]
A0A1Z5KRH4_FISSO6.520e-3964.04DNA-directed RNA polymerase subunit beta n=2 Tax=F... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..114
e-value: 7.4E-20
score: 73.1
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 3..114
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..114
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 3..114
e-value: 4.9E-23
score: 81.7
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5467contigP-wetherbeei_contig5467:2656..3639 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5467.2.1mRNA_P-wetherbeei_contig5467.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5467 2656..3645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5467.2.1 ID=prot_P-wetherbeei_contig5467.2.1|Name=mRNA_P-wetherbeei_contig5467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVG
TPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNV
PIGRIPIMLRSCRC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2