prot_P-wetherbeei_contig5467.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5467.1.1
Unique Nameprot_P-wetherbeei_contig5467.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length127
Homology
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 5.180e-50
Identity = 86/122 (70.49%), Postives = 104/122 (85.25%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 121
            + EQLSKNRVIIE D K   SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG  SDQEIVQLVGSEP+I++AF ASLE++ +  V+T +QAL Y+G KMR P KAGARA
Sbjct:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARA 122          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.860e-45
Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 121
            + EQLSKNRVIIE D K   SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG  SDQEIVQLVGSEP+I++AF ASLE++ +  VYT +QAL Y+G KMR P KAGARA
Sbjct:  236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARA 357          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.670e-42
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 117
            + EQLSKNRVIIELD KG  SA I SSTHERK+RC I+VK+GKVYL  N LGDDVPIV+ +KAMG+ESDQEIVQLVGSEP +V AF  S+EEA+   V T +QAL Y+G+KMR PKA
Sbjct:  212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNPKA 328          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.030e-40
Identity = 75/114 (65.79%), Postives = 95/114 (83.33%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 114
            +HEQLSKNRVIIELD K   SAAITSSTH+RK+RCNI+ KN K+YLK N+LGDD+PIVI+LKAMG+E DQEIVQLVG+EPE++  FA SLEE     +++ +QALT++G ++ A
Sbjct:   66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRVTA 179          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.630e-40
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 114
            + EQLSKNRVIIE+D+KG  +A ITSSTHERK+RC+I+VK G+VYLK N LG+D+PI IV KAMG+ESDQEIVQ+VGSEPE  + FA SLEE +   + T +QALTY+G K+RA
Sbjct:  179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRA 292          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S0RSE3_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RSE3_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 1.820e-37
Identity = 61/117 (52.14%), Postives = 93/117 (79.49%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 117
            I EQLSKNR+II++D+KG  ++++TSSTHERK++ N+  K+G+VYL+ N   DD+PI+++LKAMG+ESDQE+VQL+G+  +IV+  A S++E  T  V+T +QAL YMG K++  ++
Sbjct:   44 IQEQLSKNRIIIDIDSKGEVASSVTSSTHERKSKTNLVTKHGRVYLRHNTFSDDIPILVMLKAMGVESDQEVVQLIGTSRDIVNLLAPSIQECCTLQVHTQQQALEYMGSKVKTARS 160          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.210e-37
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAG 118
            IHEQLSKNRVIIE DAK C SA+ITSSTHERK++  IY+  GK++LK N   +DVPI IV+KAMG+ESD EIVQLVGS+PEIV A A SLEE     +YT  Q L Y+G K+R+  +G
Sbjct:  377 IHEQLSKNRVIIEEDAKKCISASITSSTHERKSKAYIYINKGKIFLKSNIFAEDVPIAIVIKAMGVESDLEIVQLVGSDPEIVDALAISLEEPNKLGLYTQLQCLRYIGGKIRSRVSG 494          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.340e-37
Identity = 73/120 (60.83%), Postives = 88/120 (73.33%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA-PKAGA 119
            IHEQLSKNR+IIE D K    A+ITSSTHERK+R NI++  G+VYLK N+ G D+PIVIV + MG+ESDQEIV LVGSE +I    +AS EEA    V+T +QAL Y+G KM A  K GA
Sbjct:  184 IHEQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGA 303          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.490e-37
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 114
            + EQLSKNRVI+E+D KG   A+ITSSTHERK++  I VK+G+VY++ N LGDD+PI +  KAMGMESD EIVQ VGSEPEI+ A A S+EE +   +YT  QAL Y+G K+RA
Sbjct:  458 MQEQLSKNRVILEIDGKGLVQASITSSTHERKSKAYILVKHGRVYMRSNTLGDDIPIAVAFKAMGMESDLEIVQTVGSEPEIMDALALSMEEPVKLGIYTETQALKYIGNKIRA 571          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: Q2N123_9METZ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Leucosolenia sp. AR-2003 TaxID=232267 RepID=Q2N123_9METZ)

HSP 1 Score: 138 bits (347), Expect = 1.070e-36
Identity = 66/119 (55.46%), Postives = 92/119 (77.31%), Query Frame = 0
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAGA 119
            I EQLSKNR+I+E D KG  +  + SSTHERK+R ++ VK+ K+Y+K N   DDVP+V+V KAMGMESDQEIVQ++G+E E+++ FA SLEEA + +++T++QAL YMG  +R  + GA
Sbjct:  137 IQEQLSKNRMIVETDRKGMVTCTVASSTHERKSRTSLIVKHQKLYIKHNTFTDDVPVVVVFKAMGMESDQEIVQMIGTEEELMAGFAPSLEEAASKNIFTSQQALEYMGSLVRQRQWGA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL54_ECTSI5.180e-5070.49DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE2.860e-4571.31DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA4.670e-4270.09DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA1.030e-4065.79DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WH87_9STRA2.630e-4066.67DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S0RSE3_9CHLO1.820e-3752.14DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A7S4QYU8_9STRA6.210e-3763.56DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
A0A2P4YK15_9STRA8.340e-3760.83DNA-directed RNA polymerase (Fragment) n=2 Tax=Phy... [more]
A0A7S4I9T1_9STRA8.490e-3761.40DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
Q2N123_9METZ1.070e-3655.46DNA-directed RNA polymerase (Fragment) n=1 Tax=Leu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 7..116
e-value: 4.4E-14
score: 52.5
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 8..126
e-value: 3.2E-31
score: 110.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..113
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..113
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5467contigP-wetherbeei_contig5467:1127..2025 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5467.1.1mRNA_P-wetherbeei_contig5467.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5467 1127..2025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5467.1.1 ID=prot_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNA
LGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYT
TEQALTYMGQKMRAPKAGARARLPQQT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR037034RNA_pol_Rpb2_2_sf
IPR015712DNA-dir_RNA_pol_su2