prot_P-wetherbeei_contig54600.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig54600.1.1
Unique Nameprot_P-wetherbeei_contig54600.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length154
Homology
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A6I3F0Q3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F0Q3_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 1.040e-53
Identity = 91/154 (59.09%), Postives = 116/154 (75.32%), Query Frame = 0
Query:    1 MVEIDDIAPLSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            M +IDD  P  +E LWR HA++LLRFAT LVGP+DA D+VVEAVL+ S++ +     + RAYL+RAV+ RA DLRR+ ERRWVRDLAA+GP++ +  D  +DVR+AV  LS+ QRA +YL+YWEDLTER  A  L VS G+VRRHL RA+  LR
Sbjct:    1 MSKIDDNPPTLTEQLWREHAAELLRFATVLVGPSDAHDLVVEAVLKASDSLSLGDVRNRRAYLFRAVSNRAHDLRRSRERRWVRDLAAIGPLAGAPPDSLIDVRRAVANLSLSQRAVVYLVYWEDLTERDTAALLRVSPGTVRRHLFRARTQLR 154          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A6I3AMH4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A6I3AMH4_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 8.860e-49
Identity = 90/159 (56.60%), Postives = 108/159 (67.92%), Query Frame = 0
Query:    1 MVEIDDIAPLS-----SEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            M +IDD          ++ LWR HA  ++RFAT LVG TDA DI VEA LR + A       + RAYL RAV  RA DLRR  ER+W+RDLAAV P SS+  +PNVDVR+AV +LS+ QRA IY +YWEDL ER  A  LG+S+GSV RHL RA+AHLR
Sbjct:    1 MFDIDDTPTTGIDGNRTDDLWRNHAPVMMRFATVLVGSTDAHDIAVEAFLRSAPAVISGRVDNPRAYLMRAVANRAHDLRRGRERQWMRDLAAVQPASSAAHEPNVDVRRAVAELSLTQRAVIYFVYWEDLRERDVAAVLGISLGSVHRHLVRARAHLR 159          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A524MTB4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MTB4_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 1.010e-46
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 0
Query:    1 MVEIDDIAPLSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            M++I+      ++ LWR HA+DL+RFAT LVGP DA DI VEA LR +     +   + RAYL RAV   A DLRR+ ERRW RDLAAVGP S+   D  +DVR+AV  LS+ QR  IY +YWEDL+ER  A  L V+ G+VRRHL RA+AHLR
Sbjct:    1 MMDIERYPSTGADQLWRAHAADLMRFATVLVGPVDAHDIAVEAFLRAAPIVDGETVTNPRAYLMRAVANHANDLRRSRERRWRRDLAAVGPASTVGPDTFLDVRRAVSSLSLAQRTVIYFVYWEDLSERDIATLLQVAPGTVRRHLVRARAHLR 154          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A7K0VF71_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0VF71_9ACTN)

HSP 1 Score: 157 bits (398), Expect = 1.440e-46
Identity = 85/154 (55.19%), Postives = 101/154 (65.58%), Query Frame = 0
Query:    1 MVEIDDIAPLSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            M+ ID       + LWR HA+DL+RFAT LVGP DA D+ VEA LR S      A  D RAYL RAV   A DLRR+ ERRW RDLAAVGP S++  D  +DVR AV  LS+ QR  +Y +YWEDL+E   A  L V+ G+VRRHL RA+ HLR
Sbjct:    1 MMFIDRTPSTDPDQLWRSHAADLIRFATVLVGPADAHDVAVEAFLRASAVLAGGAVADPRAYLMRAVVNHANDLRRSRERRWRRDLAAVGPSSTAGPDSFLDVRHAVSSLSLAQRTVVYFVYWEDLSESGVAALLQVAPGTVRRHLVRARTHLR 154          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A7V9DL97_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DL97_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 1.020e-40
Identity = 78/144 (54.17%), Postives = 97/144 (67.36%), Query Frame = 0
Query:   11 SSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            ++E LW RHA DLLR AT LVGP +A+D+V +A +R      +      RAYL+RAVT RA+D  R   R   RDL  V P+S   SDP VDVR AV  LSV+QRA +Y  YW D++ER  A+S+GVSVG+VRRHL RAQ+ LR
Sbjct:    3 TAEGLWARHAPDLLRLATVLVGPNEAEDVVADAFVRACRPIVEGRVAAPRAYLFRAVTNRAMDQHRRRARDRTRDLLLV-PLSCEDSDPRVDVRAAVAGLSVRQRAAVYFRYWHDMSERQIAESMGVSVGTVRRHLVRAQSILR 145          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A2H6HH45_9BACT (RNA polymerase sigma-E factor n=1 Tax=bacterium BMS3Bbin02 TaxID=2005725 RepID=A0A2H6HH45_9BACT)

HSP 1 Score: 120 bits (301), Expect = 7.300e-32
Identity = 69/153 (45.10%), Postives = 96/153 (62.75%), Query Frame = 0
Query:    2 VEIDDIAPLSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            + +D  A   +E+ +  HA+ L+RFAT LVGP DA D+V  AVLR   +    +  ++R+YL++AV   A + RR   RR  R+        S   + + +VR AV +LSV+QRAT+YL YWED+T+   AD LG+S GSVRRHL RA+ HLR
Sbjct:    1 MRLDSPAVTDAEI-YAEHATALVRFATVLVGPNDAADVVSSAVLRVLSSPGWTSVTNQRSYLHQAVANEARNFRRGETRRHDRETRVPTASVSYPREVHPEVRAAVARLSVRQRATVYLAYWEDMTDHMIADYLGISAGSVRRHLARARNHLR 152          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A7Y3GHN9_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3GHN9_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 3.380e-31
Identity = 64/142 (45.07%), Postives = 96/142 (67.61%), Query Frame = 0
Query:   13 EVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            E ++R+H+ +L+RFAT LVGP DAQD+V +A LR  ++ +     + RAYLYR+V  +A    R++ RR +R+ +A GP     S  ++DV +AV +LS++QRA ++L YW+DL     A  LG+S GSV+RHL RA+A L+
Sbjct:   18 EDIYRKHSQELVRFATGLVGPFDAQDVVTDACLRAFQSRSWPEVTNRRAYLYRSVLNQAHSHHRSTLRRRIREHSAAGPGRVEQSPVDLDVLRAVDKLSMQQRACVFLTYWDDLAPAQVAARLGISEGSVKRHLARARARLK 159          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A7Y1TTT6_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1TTT6_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 2.590e-30
Identity = 65/145 (44.83%), Postives = 93/145 (64.14%), Query Frame = 0
Query:   10 LSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            +++E ++R+++ DL+RFAT LVGP DAQD+V +  LR   +   +   + RAYLYR V   A    R++ RR +R+L +  P      + +VDV  AV +LSV+QRA++ L YWEDL+    A  LG S GSV+RHL RA+A LR
Sbjct:    1 MTNEEIYRKYSDDLVRFATGLVGPFDAQDVVTDGCLRAFRSRGWRDVSNPRAYLYRTVLNEARSHHRSTLRRRLRELRSAQPEEQPFPNVDVDVLAAVNKLSVQQRASVVLTYWEDLSPAEVASRLGTSEGSVKRHLARARARLR 145          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A662DCH4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DCH4_9ACTN)

HSP 1 Score: 117 bits (292), Expect = 3.330e-30
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   10 LSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDP---NVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            L+ E ++R++A DL+RFA  LVG TD  D+V +A+LR   + +  +  ++RAYLYRAV  +A +  R  +RRW ++L AV   SS +++P     +V  AV QLSV+QRA I L YWE  T    A  LG+S GSVRRHL RA++ LR
Sbjct:   35 LTDEEVYRKYADDLVRFAMGLVGRTDGADVVSDAMLRAFSSDSWGSVSNQRAYLYRAVFHQAANTHRDRQRRWTQELKAV---SSDITEPAEYRPEVLLAVKQLSVRQRAVIVLAYWEQFTPSETAGHLGISEGSVRRHLARARSKLR 179          
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Match: A0A7Y1US40_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1US40_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 1.070e-29
Identity = 61/143 (42.66%), Postives = 96/143 (67.13%), Query Frame = 0
Query:   12 SEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEAFTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPNVDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQAHLR 154
            +E ++R+H ++L+RFAT LVGP DA D+V +A LR  ++   +A  + RAYLYR+V  +A    R + RR +R+ A   P S +    ++DV +A+ +LS++QRA+++L YWEDL+    A  L +S GSV+RHL RA++ L+
Sbjct:    4 NEDIYRKHGTELVRFATGLVGPFDAPDVVTDACLRAFQSDNWEAVTNRRAYLYRSVLNQARSHHRTTVRRRIREHATAVPDSITPVPIDIDVLRAIDKLSMQQRASVFLTYWEDLSPTEVAARLKISEGSVKRHLARARSRLK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54600.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3F0Q3_9ACTN1.040e-5359.09Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I3AMH4_9ACTN8.860e-4956.60Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A524MTB4_9ACTN1.010e-4655.19Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7K0VF71_9ACTN1.440e-4655.19Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7V9DL97_9ACTN1.020e-4054.17Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2H6HH45_9BACT7.300e-3245.10RNA polymerase sigma-E factor n=1 Tax=bacterium BM... [more]
A0A7Y3GHN9_9ACTN3.380e-3145.07RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A7Y1TTT6_9ACTN2.590e-3044.83RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]
A0A662DCH4_9ACTN3.330e-3046.62Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7Y1US40_9ACTN1.070e-2942.66RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 102..153
e-value: 1.1E-11
score: 44.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 98..154
e-value: 2.7E-13
score: 51.2
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 15..154
e-value: 2.5E-14
score: 51.2
NoneNo IPR availableGENE3D1.10.1740.10coord: 9..94
e-value: 3.0E-10
score: 41.9
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 15..80
e-value: 1.3E-5
score: 24.9
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133RNA POLYMERASE ECF-TYPE SIGMA FACTOcoord: 13..154
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 102..154
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 13..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54600contigP-wetherbeei_contig54600:1..462 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54600.1.1mRNA_P-wetherbeei_contig54600.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig54600 1..462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig54600.1.1 ID=prot_P-wetherbeei_contig54600.1.1|Name=mRNA_P-wetherbeei_contig54600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MVEIDDIAPLSSEVLWRRHASDLLRFATALVGPTDAQDIVVEAVLRCSEA
FTKQAPIDERAYLYRAVTRRALDLRRASERRWVRDLAAVGPISSSVSDPN
VDVRQAVCQLSVKQRATIYLIYWEDLTERAAADSLGVSVGSVRRHLTRAQ
AHLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013249RNA_pol_sigma70_r4_t2
IPR036388WH-like_DNA-bd_sf
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR039425RNA_pol_sigma-70-like
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2