prot_P-wetherbeei_contig5404.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5404.1.1
Unique Nameprot_P-wetherbeei_contig5404.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length91
Homology
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.000e-49
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKL D+Q+VDAERYPQL ++K+CFIRGS VRYIQI +A+VDTELLQDACRKE+A
Sbjct:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESA 91          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.010e-47
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 0
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            QLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++Q+VD ++YPQL ++K+CFIRGS VRYIQI + EVDTELLQDA RKENA
Sbjct:   12 QLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENA 102          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.850e-47
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            LFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKL  +++VD ER+PQL ++K CFIRGS VRYIQI A+EVDTELLQDACRKENA
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQLGALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENA 91          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.050e-46
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++Q+VD ++YPQL ++K+CFIRGS VRYIQI + EVDTELLQDA RKENA
Sbjct:   44 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENA 133          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.660e-45
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKEN 90
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL D+Q+VDAER+PQL +MK+CFIRGS VRY+QI  AEVDTELLQDA R++N
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQLTAMKNCFIRGSVVRYVQIPGAEVDTELLQDAARQQN 93          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.360e-44
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            LFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKL D+Q+V+ E+YPQL  +++CFIRGS VRYIQIA  +VDTELLQDA RKENA
Sbjct:   39 LFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPLRNCFIRGSVVRYIQIAPGDVDTELLQDATRKENA 128          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A024U6S4_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6S4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.050e-43
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKE 89
            LFYSFFKTL+GKE+AVELKNDVAL GTLHSVDQYLN+KL D+ +V+  +YPQL +MK+CFIRGS VRYIQIA A+VDTELLQDA R+E
Sbjct:    2 LFYSFFKTLIGKEVAVELKNDVALVGTLHSVDQYLNIKLTDVSVVEENKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARRE 89          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S4K237_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K237_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.550e-43
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 91
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++ +VD  RYPQL ++ + F+RGS VRYIQI A +VDTELLQDA RKENA
Sbjct:    4 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVSVVDKGRYPQLLTLNNVFVRGSVVRYIQIPAGDVDTELLQDAARKENA 93          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.890e-43
Identity = 69/87 (79.31%), Postives = 81/87 (93.10%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKE 89
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL D+Q+VD+ER+PQL +MK+CFIRGS VRY+QI A+EVDTELLQDA R++
Sbjct:   49 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQLQAMKNCFIRGSVVRYVQIPASEVDTELLQDAARQQ 135          
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: B8BUU1_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUU1_THAPS)

HSP 1 Score: 144 bits (362), Expect = 5.570e-43
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKEN 90
            QLF+SFFKTLVGKEIAVELKNDV LTGTLHSVDQYLN+KL ++ +V+ ++YPQL S+K+CFIRGS VRY+QI   +VDTELLQDA RKEN
Sbjct:    1 QLFFSFFKTLVGKEIAVELKNDVVLTGTLHSVDQYLNIKLTNVSVVNQDKYPQLMSLKNCFIRGSVVRYVQINPNDVDTELLQDATRKEN 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI2.000e-4986.67U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A7S3PVL2_9STRA2.010e-4781.32U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A835YRK1_9STRA5.850e-4782.22U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A7S3PVB5_9STRA3.050e-4681.11Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3SK19_9STRA2.660e-4580.68U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A7S2U7M8_9STRA1.360e-4478.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A024U6S4_9STRA1.050e-4377.27U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=A... [more]
A0A7S4K237_9STRA2.550e-4377.78Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2RW57_9STRA3.890e-4379.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BUU1_THAPS5.570e-4375.56Sm domain-containing protein (Fragment) n=1 Tax=Th... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 9.1E-14
score: 61.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 6.7E-16
score: 57.8
NoneNo IPR availableGENE3D2.30.30.100coord: 1..91
e-value: 1.2E-30
score: 106.7
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..91
e-value: 5.1E-44
score: 146.2
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 2..90
IPR016654U6 snRNA-associated Sm-like protein LSm2CDDcd01725LSm2coord: 2..90
e-value: 1.29608E-55
score: 164.684
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5404contigP-wetherbeei_contig5404:483..943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5404.1.1mRNA_P-wetherbeei_contig5404.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5404 483..943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5404.1.1 ID=prot_P-wetherbeei_contig5404.1.1|Name=mRNA_P-wetherbeei_contig5404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAER
YPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf