prot_P-wetherbeei_contig52152.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig52152.1.1
Unique Nameprot_P-wetherbeei_contig52152.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length57
Homology
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BLAST of mRNA_P-wetherbeei_contig52152.1.1 vs. uniprot
Match: A0A0R3M182_9BRAD (HTH luxR-type domain-containing protein n=1 Tax=Bradyrhizobium valentinum TaxID=1518501 RepID=A0A0R3M182_9BRAD)

HSP 1 Score: 50.1 bits (118), Expect = 9.880e-6
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:    6 TALAGGLIALDAGGQVVWMDDATRQAVNGGLKNLTEAIALQSRAGVRCILTT 57
            +AL GGLI +DA GQ+VW+DD TR+ VNGGL++L   I   +   + C +T+
Sbjct:   20 SALRGGLIIVDAKGQIVWIDDNTRRRVNGGLQDLELPIDKSNATVIDCFVTS 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52152.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0R3M182_9BRAD9.880e-648.08HTH luxR-type domain-containing protein n=1 Tax=Br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52152contigP-wetherbeei_contig52152:23..193 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52152.1.1mRNA_P-wetherbeei_contig52152.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig52152 23..193 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig52152.1.1 ID=prot_P-wetherbeei_contig52152.1.1|Name=mRNA_P-wetherbeei_contig52152.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
LAEAATALAGGLIALDAGGQVVWMDDATRQAVNGGLKNLTEAIALQSRAG
VRCILTT
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