prot_P-wetherbeei_contig513.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig513.2.1
Unique Nameprot_P-wetherbeei_contig513.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length162
Homology
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.530e-13
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 72
            +AHIFRPFPGYQS+R+R K     D     R M F+EFD  YQAS A+ A  DY++   DP + TL + ++R
Sbjct:   29 VAHIFRPFPGYQSLRIRHKESARGDGA--QRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 98          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A162AIC9_DAUCS (RRM domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AIC9_DAUCS)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-10
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASGGYG 92
            +AHIFRPF GY+ +R+  K      R  +   + F++F+ P  A+ A  AIQ YK+   DP+SA LR+QFSR    P PR    SG SG YG
Sbjct:  160 VAHIFRPFVGYKEVRLVSKPSKHHGRNPLI--LCFVDFENPVCAATALSAIQGYKVDEHDPDSAYLRLQFSR---HPGPR----SGGSGRYG 242          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.000e-10
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMV-FIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQ 74
            +AHIFRPFPGY S+R+R K G  +       + + F+EF++ Y A+ A+    DY++   D NSA LRI++++++
Sbjct:  203 LAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A2I0AEG6_9ASPA (U2 small nuclear ribonucleoprotein B n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AEG6_9ASPA)

HSP 1 Score: 64.7 bits (156), Expect = 1.790e-9
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYG 84
            +AHIFRPF G++ +R+ +K     D G     + F++F+TP  A AA +A++ Y+M L+DP+S+ LR+QF+R   R P +  +G
Sbjct:  177 VAHIFRPFLGFREIRLVKKEPK-YDGGSPVL-LCFVDFNTPACAMAAMNALEGYRMDLQDPDSSVLRLQFARFAGRRPSQGFHG 258          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: UPI00053C0C6D (RNA-binding protein 2-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0C6D)

HSP 1 Score: 63.5 bits (153), Expect = 4.840e-9
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 72
            +AHIFRPF GY+ +R+  K   D  RG  T  + F++F+TP  A+ A  A++ Y++   DP S +LR+QFSR
Sbjct:  179 VAHIFRPFVGYREVRLVNKE--DKHRGGDTVLLCFVDFETPACAATAMSALRGYQVDETDPESKSLRLQFSR 248          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A1U8A3I6_NELNU (RNA-binding protein 1-like isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A3I6_NELNU)

HSP 1 Score: 62.8 bits (151), Expect = 8.500e-9
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR---TQSRPPPR 80
            + HIFRPF G++ +R+  K      RG     + F++F TP  A+ A +A+Q YKM L+DP+S+ LR+QF+R    +S P PR
Sbjct:  171 VGHIFRPFLGFKEVRLVNKEPRH--RGGDPLILCFVDFTTPACAATALNALQGYKMDLQDPDSSILRLQFARFPGPRSGPGPR 251          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A835V709_VANPL (RRM domain-containing protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V709_VANPL)

HSP 1 Score: 62.4 bits (150), Expect = 1.220e-8
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPR 80
            +AHIFRPF G++ +R+ +K     D G     + F++F TP  A AA +A++ Y M L DP S+ LR+QF++  +R P R
Sbjct:  172 VAHIFRPFLGFEEVRLVKKEPK-YDSGSPVL-LCFVDFTTPAYAMAAMNAVEGYSMDLHDPYSSVLRLQFAKFPARRPSR 249          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6A3CM94_HIBSY (MEG5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CM94_HIBSY)

HSP 1 Score: 62.0 bits (149), Expect = 1.600e-8
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGS 85
            +AHIFRPF GY+ +R+  K      RG     + F++F +P  A+ A  A+Q YKM   DP+S  LR+QFSR    P PR   G+
Sbjct:  170 VAHIFRPFVGYEEVRLVSKEPRQ--RGGDPLILCFVDFSSPACAATAMSALQGYKMDEHDPDSKYLRLQFSR---HPGPRSGPGT 249          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A2J6M0W2_LACSA (RRM domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6M0W2_LACSA)

HSP 1 Score: 61.2 bits (147), Expect = 3.730e-8
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 72
            +AHIFRPF GY+ +R+  K       G     + F++F TP  A+ A  A+Q YKM   DP+SA LR+QFS+
Sbjct:  195 VAHIFRPFVGYKEVRLVSKESKHQRNGDPVI-ISFVDFSTPACAATAMSALQGYKMDEHDPDSAYLRLQFSK 265          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A059BU79_EUCGR (RRM domain-containing protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BU79_EUCGR)

HSP 1 Score: 60.5 bits (145), Expect = 5.750e-8
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    1 MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 72
            +AHIFRPF GY+ +R+  K      RG     + F++F  P  A+ A  A+Q YKM   DP+SA LR+QFSR
Sbjct:  169 VAHIFRPFVGYKEVRLVIKESKH--RGGDPLILCFVDFVNPACAATALSALQGYKMDEHDPDSAYLRLQFSR 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z002_9STRA4.530e-1348.61RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A162AIC9_DAUCS2.140e-1044.57RRM domain-containing protein n=1 Tax=Daucus carot... [more]
A0A6H5L4C0_9PHAE7.000e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I0AEG6_9ASPA1.790e-940.48U2 small nuclear ribonucleoprotein B n=1 Tax=Apost... [more]
UPI00053C0C6D4.840e-944.44RNA-binding protein 2-like n=1 Tax=Tarenaya hassle... [more]
A0A1U8A3I6_NELNU8.500e-942.17RNA-binding protein 1-like isoform X1 n=3 Tax=Nelu... [more]
A0A835V709_VANPL1.220e-841.25RRM domain-containing protein n=2 Tax=Vanilla plan... [more]
A0A6A3CM94_HIBSY1.600e-842.35MEG5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=... [more]
A0A2J6M0W2_LACSA3.730e-844.44RRM domain-containing protein n=4 Tax=Lactuca TaxI... [more]
A0A059BU79_EUCGR5.750e-845.83RRM domain-containing protein n=4 Tax=Myrtoideae T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..78
e-value: 3.7E-8
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..81
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 2..76
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 29..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig513contigP-wetherbeei_contig513:1268..2021 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig513.2.1mRNA_P-wetherbeei_contig513.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig513 1199..2438 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig513.2.1 ID=prot_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDA
IQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASGGYGSYGGGGGG
GSSTPPARTRRFDGGGSGGGGGGGGGGYGGGGSYSYRGASANGGGGKGGG
GYERSPLPAAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf