mRNA_P-wetherbeei_contig513.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.320e-24 Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 4 LPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
LPPDAS TLYVEG P D +ERE+AHIFRPFPGYQS+R+R K D R M F+EFD YQAS A+ A DY++ DP + TL + ++R
Sbjct: 7 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGA--QRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 98
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: UPI001CFA21FE (RNA-binding protein 2-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA21FE) HSP 1 Score: 102 bits (255), Expect = 4.710e-22 Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
PLPPDAS TLYVEG PPDTT RE+AHIFRPF GY+ +R+ K RG + F++F +P A+ A A+Q YKM +DP+S LR+QFSR P Q GSG G
Sbjct: 146 PLPPDASNTLYVEGFPPDTTRREVAHIFRPFVGYKEVRLVSKGSKQ--RGGDPLILCFVDFASPACAATAMSALQGYKMDEDDPDSRYLRLQFSRY-----PGQRSGSGTRG 250
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6A1WA13_9ROSI (RNA-binding protein with multiple splicing n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WA13_9ROSI) HSP 1 Score: 100 bits (250), Expect = 2.580e-21 Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+ K RG + F++F P A+ A A+Q YKM EDP+S LR+QFSR P PR GS G
Sbjct: 141 PLPPDASSTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESKH--RGGDPLILCFVDFANPACAATALSALQGYKMDEEDPDSNYLRLQFSRY---PGPRSGAGSRVRG 247
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6P5ZAZ0_DURZI (RNA-binding protein 2-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZAZ0_DURZI) HSP 1 Score: 99.8 bits (247), Expect = 6.630e-21 Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+ K RG + F++F +P A+ A A+Q YKM +DP+S LR+QFSR P PR GSG G
Sbjct: 146 PLPPDASNTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESRH--RGGDPIILCFVDFSSPACAATAMSALQGYKMDEDDPDSNYLRLQFSRY---PGPRS--GSGTRG 250
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A1U8A3I6_NELNU (RNA-binding protein 1-like isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A3I6_NELNU) HSP 1 Score: 99.0 bits (245), Expect = 1.300e-20 Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR---TQSRPPPR 309
PLPPDAS TL+VEG PPD+T RE+ HIFRPF G++ +R+ K RG + F++F TP A+ A +A+Q YKM L+DP+S+ LR+QF+R +S P PR
Sbjct: 148 PLPPDASSTLFVEGLPPDSTRREVGHIFRPFLGFKEVRLVNKEPRH--RGGDPLILCFVDFTTPACAATALNALQGYKMDLQDPDSSILRLQFARFPGPRSGPGPR 251
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A5J5VV46_GOSBA (RRM domain-containing protein n=2 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5VV46_GOSBA) HSP 1 Score: 97.1 bits (240), Expect = 1.720e-20 Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+ K RG + F++F +P A+ A A+Q YKM DP+S LR+QFSR
Sbjct: 78 PLPPDASNTLYVEGFPPDSTRREVAHIFRPFVGYKEVRLVSKEPRQ--RGGDHILLCFVDFSSPACAATAMSALQGYKMDEHDPDSNYLRLQFSR 170
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A059BU79_EUCGR (RRM domain-containing protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BU79_EUCGR) HSP 1 Score: 98.6 bits (244), Expect = 1.740e-20 Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+ K RG + F++F P A+ A A+Q YKM DP+SA LR+QFSR
Sbjct: 146 PLPPDASSTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVIKESKH--RGGDPLILCFVDFVNPACAATALSALQGYKMDEHDPDSAYLRLQFSR 238
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6A3CM94_HIBSY (MEG5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CM94_HIBSY) HSP 1 Score: 98.6 bits (244), Expect = 1.770e-20 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGS 324
PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+ K RG + F++F +P A+ A A+Q YKM DP+S LR+QFSR P PR G+
Sbjct: 147 PLPPDASNTLYVEGFPPDSTRREVAHIFRPFVGYEEVRLVSKEPRQ--RGGDPLILCFVDFSSPACAATAMSALQGYKMDEHDPDSKYLRLQFSR---HPGPRSGPGT 249
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6J1AF90_9ROSI (RNA-binding protein 2-like isoform X2 n=6 Tax=Byttnerioideae TaxID=214909 RepID=A0A6J1AF90_9ROSI) HSP 1 Score: 98.2 bits (243), Expect = 2.870e-20 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGS 324
PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+ K RG + F++F P A+ A A+Q YKM DP+S LR+QFSR P PR G+
Sbjct: 147 PLPPDASNTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVSKESRH--RGGDPIILCFVDFSNPACAATAMSALQGYKMDEHDPDSNYLRLQFSRY---PGPRSSSGA 249
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A8K0H4V7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H4V7_9ROSA) HSP 1 Score: 99.8 bits (247), Expect = 2.970e-20 Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+ K RG + F++F P A+ A A+Q YKM DP+S+ LR+QFSR P PR GSG+ G
Sbjct: 236 PLPPDASSTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVSKESKH--RGGDPLILCFVDFANPACAATAMSALQGYKMDELDPDSSHLRLQFSRF---PGPRS--GSGSRG 340 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig513.2.1 >prot_P-wetherbeei_contig513.2.1 ID=prot_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAback to top mRNA from alignment at P-wetherbeei_contig513:1199..2438+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig513.2.1 ID=mRNA_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig513:1199..2438+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig513:1199..2438+ >mRNA_P-wetherbeei_contig513.2.1 ID=mRNA_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig513:1199..2438+ (Phaeothamnion wetherbeei SAG_119_79)back to top |