mRNA_P-wetherbeei_contig513.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig513.2.1
Unique NamemRNA_P-wetherbeei_contig513.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.320e-24
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    4 LPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
            LPPDAS TLYVEG P D +ERE+AHIFRPFPGYQS+R+R K     D     R M F+EFD  YQAS A+ A  DY++   DP + TL + ++R
Sbjct:    7 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGA--QRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 98          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: UPI001CFA21FE (RNA-binding protein 2-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA21FE)

HSP 1 Score: 102 bits (255), Expect = 4.710e-22
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
            PLPPDAS TLYVEG PPDTT RE+AHIFRPF GY+ +R+  K      RG     + F++F +P  A+ A  A+Q YKM  +DP+S  LR+QFSR      P Q  GSG  G
Sbjct:  146 PLPPDASNTLYVEGFPPDTTRREVAHIFRPFVGYKEVRLVSKGSKQ--RGGDPLILCFVDFASPACAATAMSALQGYKMDEDDPDSRYLRLQFSRY-----PGQRSGSGTRG 250          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6A1WA13_9ROSI (RNA-binding protein with multiple splicing n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WA13_9ROSI)

HSP 1 Score: 100 bits (250), Expect = 2.580e-21
Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
            PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+  K      RG     + F++F  P  A+ A  A+Q YKM  EDP+S  LR+QFSR    P PR   GS   G
Sbjct:  141 PLPPDASSTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESKH--RGGDPLILCFVDFANPACAATALSALQGYKMDEEDPDSNYLRLQFSRY---PGPRSGAGSRVRG 247          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6P5ZAZ0_DURZI (RNA-binding protein 2-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZAZ0_DURZI)

HSP 1 Score: 99.8 bits (247), Expect = 6.630e-21
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
            PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+  K      RG     + F++F +P  A+ A  A+Q YKM  +DP+S  LR+QFSR    P PR   GSG  G
Sbjct:  146 PLPPDASNTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESRH--RGGDPIILCFVDFSSPACAATAMSALQGYKMDEDDPDSNYLRLQFSRY---PGPRS--GSGTRG 250          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A1U8A3I6_NELNU (RNA-binding protein 1-like isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A3I6_NELNU)

HSP 1 Score: 99.0 bits (245), Expect = 1.300e-20
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR---TQSRPPPR 309
            PLPPDAS TL+VEG PPD+T RE+ HIFRPF G++ +R+  K      RG     + F++F TP  A+ A +A+Q YKM L+DP+S+ LR+QF+R    +S P PR
Sbjct:  148 PLPPDASSTLFVEGLPPDSTRREVGHIFRPFLGFKEVRLVNKEPRH--RGGDPLILCFVDFTTPACAATALNALQGYKMDLQDPDSSILRLQFARFPGPRSGPGPR 251          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A5J5VV46_GOSBA (RRM domain-containing protein n=2 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5VV46_GOSBA)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
            PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+  K      RG     + F++F +P  A+ A  A+Q YKM   DP+S  LR+QFSR
Sbjct:   78 PLPPDASNTLYVEGFPPDSTRREVAHIFRPFVGYKEVRLVSKEPRQ--RGGDHILLCFVDFSSPACAATAMSALQGYKMDEHDPDSNYLRLQFSR 170          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A059BU79_EUCGR (RRM domain-containing protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BU79_EUCGR)

HSP 1 Score: 98.6 bits (244), Expect = 1.740e-20
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSR 285
            PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+  K      RG     + F++F  P  A+ A  A+Q YKM   DP+SA LR+QFSR
Sbjct:  146 PLPPDASSTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVIKESKH--RGGDPLILCFVDFVNPACAATALSALQGYKMDEHDPDSAYLRLQFSR 238          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6A3CM94_HIBSY (MEG5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CM94_HIBSY)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-20
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGS 324
            PLPPDAS TLYVEG PPD+T RE+AHIFRPF GY+ +R+  K      RG     + F++F +P  A+ A  A+Q YKM   DP+S  LR+QFSR    P PR   G+
Sbjct:  147 PLPPDASNTLYVEGFPPDSTRREVAHIFRPFVGYEEVRLVSKEPRQ--RGGDPLILCFVDFSSPACAATAMSALQGYKMDEHDPDSKYLRLQFSR---HPGPRSGPGT 249          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A6J1AF90_9ROSI (RNA-binding protein 2-like isoform X2 n=6 Tax=Byttnerioideae TaxID=214909 RepID=A0A6J1AF90_9ROSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.870e-20
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGS 324
            PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+  K      RG     + F++F  P  A+ A  A+Q YKM   DP+S  LR+QFSR    P PR   G+
Sbjct:  147 PLPPDASNTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVSKESRH--RGGDPIILCFVDFSNPACAATAMSALQGYKMDEHDPDSNYLRLQFSRY---PGPRSSSGA 249          
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Match: A0A8K0H4V7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H4V7_9ROSA)

HSP 1 Score: 99.8 bits (247), Expect = 2.970e-20
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 PLPPDASCTLYVEGAPPDTTEREMAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDAIQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASG 336
            PLPPDAS TLYVEG PPD+T+RE+AHIFRPF GY+ +R+  K      RG     + F++F  P  A+ A  A+Q YKM   DP+S+ LR+QFSR    P PR   GSG+ G
Sbjct:  236 PLPPDASSTLYVEGLPPDSTKREVAHIFRPFVGYKEVRLVSKESKH--RGGDPLILCFVDFANPACAATAMSALQGYKMDELDPDSSHLRLQFSRF---PGPRS--GSGSRG 340          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig513.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z002_9STRA5.320e-2455.32RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
UPI001CFA21FE4.710e-2251.79RNA-binding protein 2-like n=1 Tax=Mangifera indic... [more]
A0A6A1WA13_9ROSI2.580e-2151.79RNA-binding protein with multiple splicing n=1 Tax... [more]
A0A6P5ZAZ0_DURZI6.630e-2151.79RNA-binding protein 2-like n=1 Tax=Durio zibethinu... [more]
A0A1U8A3I6_NELNU1.300e-2050.00RNA-binding protein 1-like isoform X1 n=3 Tax=Nelu... [more]
A0A5J5VV46_GOSBA1.720e-2053.68RRM domain-containing protein n=2 Tax=Gossypium ba... [more]
A0A059BU79_EUCGR1.740e-2054.74RRM domain-containing protein n=4 Tax=Myrtoideae T... [more]
A0A6A3CM94_HIBSY1.770e-2050.93MEG5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=... [more]
A0A6J1AF90_9ROSI2.870e-2050.93RNA-binding protein 2-like isoform X2 n=6 Tax=Bytt... [more]
A0A8K0H4V7_9ROSA2.970e-2051.79Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig513contigP-wetherbeei_contig513:1199..2438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010477393.1
PFAMsRRM_1
Model size972
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.47e-10
EggNOG OGs28P7S@1|root,2QVUV@2759|Eukaryota,37R9W@33090|Viridiplantae,3GK80@35493|Streptophyta
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-28_002420.1
DescriptionRNA recognition motif
Cds size486
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.570785-UTR-P-wetherbeei_contig513:1198..12671683186770.570785-UTR-P-wetherbeei_contig513:1198..1267Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig513 1199..1267 +
1683186770.6040342-UTR-P-wetherbeei_contig513:2021..24381683186770.6040342-UTR-P-wetherbeei_contig513:2021..2438Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig513 2022..2438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.5819235-CDS-P-wetherbeei_contig513:1267..13961683186770.5819235-CDS-P-wetherbeei_contig513:1267..1396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig513 1268..1396 +
1683186770.5912414-CDS-P-wetherbeei_contig513:1664..20211683186770.5912414-CDS-P-wetherbeei_contig513:1664..2021Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig513 1665..2021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig513.2.1prot_P-wetherbeei_contig513.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig513 1268..2021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig513.2.1

>prot_P-wetherbeei_contig513.2.1 ID=prot_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MAHIFRPFPGYQSMRMREKNGMDIDRGVVTRKMVFIEFDTPYQASAARDA
IQDYKMSLEDPNSATLRIQFSRTQSRPPPRQHYGSGASGGYGSYGGGGGG
GSSTPPARTRRFDGGGSGGGGGGGGGGYGGGGSYSYRGASANGGGGKGGG
GYERSPLPAAG*
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mRNA from alignment at P-wetherbeei_contig513:1199..2438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig513.2.1 ID=mRNA_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig513:1199..2438+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGCCGCCGGACGCGTCATGCACGCTGTATGTGGAAGGGGCGCCGCC GGACACAACGGAGCGAGAGATGGCGCACATCTTCCGGCCGTTTCCGGGGT ACCAGTCGATGCGGATGCGGGAGAAGAATGGCATGGACATCGACCGCGGC GTCGTGACCCGCAAGATGGTCTTCATCGAGTTTGACACGCCATATCAAGT AAGGAGAAAGGGTTCTCGGAATGCTCTCTCAATCGCGCTCTGCTGCGTTT TCTTGTTCCTTTCGCCGACGTCTAGAGGCCTGGAAAGCGATTTCTCTTTC TTGTTGTATTCGTAGCTATTTTCTCCTCGCATCGCACGTTTCTTGGCAGT GTCTTCCGGGATCATTTGTGAGTTGTACCTCCTCGGTGTCTGTCTAGTTT GCCTACTTTGCAGCTCCCGCCGGCTCAATTGACTGCTTGTTATCCTTGGG CGGGCCGATGCTGCAGGCGTCAGCAGCGCGAGACGCTATCCAGGACTACA AGATGTCCCTAGAGGACCCGAATTCGGCGACTCTGCGGATACAGTTCTCG CGGACGCAAAGCCGCCCGCCGCCGCGGCAGCACTACGGCAGCGGTGCCTC CGGCGGCTACGGATCGTATGGCGGCGGTGGCGGTGGCGGCAGCAGCACTC CACCCGCCCGGACCCGGCGCTTCGACGGGGGAGGCAGCGGCGGCGGCGGC GGCGGCGGTGGAGGAGGCTACGGTGGGGGAGGCAGTTACAGCTACAGAGG CGCTTCCGCCAACGGCGGCGGCGGTAAGGGCGGCGGTGGATACGAAAGAT CGCCGTTGCCAGCCGCTGGGTGAGGATGGAGAATCGTATCGGAAATGATG ATTGGGAGGAATCTCGTCCACCTTTGTCTTCAACCGCCAACCCGTCGTGC AAGAGCGGCGGCAGCCGCGTGATGCGGTGGTGGTGGCGGCGGCGGCGGCA AACACGCGGAAAATGGCGTCTTCGTTCACGGCAAAAGTATCAGGCAGCGC TCTGTGAGCTAGGAGCGGACAGGCGGGGTAAAATATATAAAAATGCAGCA GCAACACATCTTTGAACTCTCCTTGCCTTGGCAAGAATCGCGGCTTCCGC ACGCGGCGCCCTCTTGGCGCCGGGGGGACGCGGAGGAGCGGCGTCGCAAG GATAGACCGGGGGAAGAGGTTGTGCGCACTGTGGCGATCTGTCGGAGGGG CAGAAGAGAGGAAGCCGCCGGCAACAGCTAAAGAAACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig513:1199..2438+

>mRNA_P-wetherbeei_contig513.2.1 ID=mRNA_P-wetherbeei_contig513.2.1|Name=mRNA_P-wetherbeei_contig513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig513:1199..2438+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACATCTTCCGGCCGTTTCCGGGGTACCAGTCGATGCGGATGCG
GGAGAAGAATGGCATGGACATCGACCGCGGCGTCGTGACCCGCAAGATGG
TCTTCATCGAGTTTGACACGCCATATCAAGCGTCAGCAGCGCGAGACGCT
ATCCAGGACTACAAGATGTCCCTAGAGGACCCGAATTCGGCGACTCTGCG
GATACAGTTCTCGCGGACGCAAAGCCGCCCGCCGCCGCGGCAGCACTACG
GCAGCGGTGCCTCCGGCGGCTACGGATCGTATGGCGGCGGTGGCGGTGGC
GGCAGCAGCACTCCACCCGCCCGGACCCGGCGCTTCGACGGGGGAGGCAG
CGGCGGCGGCGGCGGCGGCGGTGGAGGAGGCTACGGTGGGGGAGGCAGTT
ACAGCTACAGAGGCGCTTCCGCCAACGGCGGCGGCGGTAAGGGCGGCGGT
GGATACGAAAGATCGCCGTTGCCAGCCGCTGGGTGA
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