prot_P-wetherbeei_contig20595.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig20595.2.1
Unique Nameprot_P-wetherbeei_contig20595.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length76
Homology
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A812ZC74_SYMMI (SUPT4H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZC74_SYMMI)

HSP 1 Score: 86.7 bits (213), Expect = 1.690e-20
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGL 67
            L+KT DQ  FY  GCENC FL++  +  R+N+CTSAYF G+I+++EP GSWVARWQ+I E++  GL
Sbjct:    9 LLKTVDQ--FYESGCENCEFLHLSGNQSRINNCTSAYFAGMIALLEPHGSWVARWQKI-ENAVPGL 71          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1J6IFV7_NICAT (Transcription elongation factor spt4-like 2 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IFV7_NICAT)

HSP 1 Score: 82.4 bits (202), Expect = 8.600e-19
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGGGLVHWRKL 73
            LVKT DQ  F   GCENCPF  M +D ERV DCT++ FTGLIS+++P  SW ARW RI ++ G G   +R L
Sbjct:   25 LVKTYDQ--FRESGCENCPFFKMDEDYERVGDCTTSNFTGLISVMDPTRSWAARWLRIEKNIGSGKCLFRCL 94          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.750e-18
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            LVKT  Q  F  +GCENCPFL +++  ERV++CTS+YF+G+I+M+ P+ SWVARWQRI
Sbjct:   38 LVKTLTQ--FTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRI 93          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A662XZF9_9STRA (Spt4 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZF9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.040e-18
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            L+KT  Q  FY+ GCENC FL M D+ +RV +CTSAYF G+I+M++P+ SWVA+WQRI
Sbjct:   39 LIKTFTQ--FYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 94          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: K3WRG9_GLOUD (Spt4 domain-containing protein n=33 Tax=Oomycota TaxID=4762 RepID=K3WRG9_GLOUD)

HSP 1 Score: 81.3 bits (199), Expect = 4.600e-18
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            L+KT  Q  FY+ GCENC FL M D+ +RV +CTSAYF G+I+M++P+ SWVA+WQRI
Sbjct:   38 LIKTFTQ--FYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRI 93          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1S4BRB4_TOBAC (Transcription elongation factor SPT4 homolog n=3 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BRB4_TOBAC)

HSP 1 Score: 80.5 bits (197), Expect = 6.960e-18
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRICESSGG 65
            LVKT DQ  F   GCENCPF  M +D ERV DCT++ FTGLIS+++P  SW ARW RI  S  G
Sbjct:   25 LVKTYDQ--FRESGCENCPFFKMDEDYERVGDCTTSNFTGLISVMDPTRSWAARWLRIARSVPG 86          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A8K1CRQ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRQ1_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 8.550e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            LVKT  Q  FY+ GCENC FL M D+ +RV DCTSA+F G+I+M+ P+ SWVA+WQRI
Sbjct:   34 LVKTFTQ--FYDTGCENCQFLQMADNRQRVADCTSAHFEGMIAMMHPKESWVAKWQRI 89          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A2Z7D9A9_9LAMI (Spt4 domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7D9A9_9LAMI)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-17
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            LVKT DQ  F   GCENCPF  M DD ERV DCT+  FTG+IS+I+P  SW ARW RI
Sbjct:   28 LVKTYDQ--FRESGCENCPFFQMDDDHERVVDCTTPNFTGMISVIDPARSWAARWLRI 83          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A067BG27_SAPPC (Spt4 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BG27_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            LVKT  Q  FY  GC+NC  L M+D+ +RV DCT+AYF G+I+M++PR SWVA+W+RI
Sbjct:   32 LVKTYSQ--FYESGCDNCAVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRI 87          
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Match: A0A1W0AA13_9STRA (Transcription elongation factor SPT4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA13_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    2 LVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRGSWVARWQRI 59
            LVKT  Q  FY  GC+NC  L M+D+ +RV DCT+AYF G+I+M++PR SWVA+W+RI
Sbjct:   32 LVKTYSQ--FYESGCDNCTVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRI 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20595.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812ZC74_SYMMI1.690e-2057.58SUPT4H1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A1J6IFV7_NICAT8.600e-1955.56Transcription elongation factor spt4-like 2 n=1 Ta... [more]
A0A835Z5B7_9STRA1.750e-1860.34Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
A0A662XZF9_9STRA2.040e-1860.34Spt4 domain-containing protein n=1 Tax=Nothophytop... [more]
K3WRG9_GLOUD4.600e-1860.34Spt4 domain-containing protein n=33 Tax=Oomycota T... [more]
A0A1S4BRB4_TOBAC6.960e-1859.38Transcription elongation factor SPT4 homolog n=3 T... [more]
A0A8K1CRQ1_PYTOL8.550e-1862.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2Z7D9A9_9LAMI1.860e-1763.79Spt4 domain-containing protein n=1 Tax=Dorcoceras ... [more]
A0A067BG27_SAPPC2.200e-1758.62Spt4 domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A1W0AA13_9STRA2.200e-1758.62Transcription elongation factor SPT4 n=1 Tax=Thrau... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 2..62
e-value: 3.4E-16
score: 69.8
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 7..62
e-value: 2.2E-19
score: 69.3
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 2..59
e-value: 6.07608E-25
score: 86.9089
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 1..69
e-value: 1.9E-20
score: 74.7
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 2..62
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 12..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20595contigP-wetherbeei_contig20595:469..846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20595.2.1mRNA_P-wetherbeei_contig20595.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig20595 63..921 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig20595.2.1 ID=prot_P-wetherbeei_contig20595.2.1|Name=mRNA_P-wetherbeei_contig20595.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MLVKTTDQASFYNEGCENCPFLYMKDDTERVNDCTSAYFTGLISMIEPRG
SWVARWQRICESSGGGLVHWRKLSE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR038510Spt4_sf
IPR009287Spt4
IPR029040RPABC4/Spt4