prot_P-wetherbeei_contig2054.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig2054.2.1
Unique Nameprot_P-wetherbeei_contig2054.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length58
Homology
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.770e-16
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 0
Query:   11 QGVLISCDVPTRQFILHLNKKRQ--FVLNELDETHLFVEASAVQEIR 55
            +GVLI+CDVPT+QFILHLN K+   F++N+LDETHLFVEASAV EIR
Sbjct:    9 KGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIR 55          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A167QQ08_PHYB8 (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167QQ08_PHYB8)

HSP 1 Score: 66.6 bits (161), Expect = 3.350e-13
Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LDETHLF+EAS+V ++R+ L
Sbjct:    2 VKAVKGVLVECDSTVKQIVLNLNKRSNFVIEDLDETHLFIEASSVPQLRYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7BNP7_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BNP7_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 6.580e-13
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LD+THLF+EAS+VQ++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRSHFVIEDLDDTHLFIEASSVQQLQYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1C7NDR9_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=8 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7NDR9_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 3.900e-12
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LNK+  F++ +LDETHLF+EAS V+++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIEASWVEQLKYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A068SFM5_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SFM5_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 5.740e-12
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LN++  FV+ +LDETHLFVEAS VQE+++ L
Sbjct:  116 VKAVKGVLLECDPTVKQIVLNLNERGNFVIEDLDETHLFVEASCVQELQYEL 167          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A163M8B9_ABSGL (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Absidia TaxID=4828 RepID=A0A163M8B9_ABSGL)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVLI CD   +Q +L+LNK+  FV+ +LDETHLF+EAS V  ++  L
Sbjct:    2 VKAVKGVLIECDTTVKQIVLNLNKRGNFVIEDLDETHLFIEASWVDHLKQQL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1X2HID9_SYNRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HID9_SYNRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.710e-11
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV GVL+ CD   +Q +L+LNK   FV+ +LDETHLF++A AV ++++ L
Sbjct:    2 VKAVTGVLLECDTTVKQIVLNLNKTSNFVIEDLDETHLFIDAKAVSQLQYEL 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A367KWQ9_RHIST (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KWQ9_RHIST)

HSP 1 Score: 62.0 bits (149), Expect = 3.100e-11
Identity = 25/52 (48.08%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LNK+  F++ +LDETHLF+E+S V ++++ L
Sbjct:   17 VKAVKGVLLECDSTVKQIVLNLNKRGNFIIEDLDETHLFIESSWVDQLKYEL 68          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A1Y2H0E8_9FUNG (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0E8_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 3.820e-11
Identity = 23/52 (44.23%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GV++ CD   +Q IL LN+K +F++ +LD+TH+FV+AS ++++R+ +
Sbjct:    2 VKAVKGVVVECDTSVKQIILGLNEKGKFIIEDLDDTHVFVDASCIEQLRFDI 53          
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Match: A0A8H7VWE1_9FUNG (RNA polymerase II transcription factor B subunit 5 n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VWE1_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 3.450e-10
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 VRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASAVQEIRWGL 58
            V+AV+GVL+ CD   +Q +L+LNK+  FV+ +LDETHLF+E+S V+++++ L
Sbjct:    2 VKAVKGVLLECDSTVKQIVLNLNKRGNFVIEDLDETHLFIESSWVEQLKYEL 53          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2054.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC95_9STRA7.770e-1674.47General transcription and DNA repair factor IIH su... [more]
A0A167QQ08_PHYB83.350e-1353.85General transcription and DNA repair factor IIH su... [more]
A0A8H7BNP7_9FUNG6.580e-1351.92General transcription and DNA repair factor IIH su... [more]
A0A1C7NDR9_9FUNG3.900e-1250.00General transcription and DNA repair factor IIH su... [more]
A0A068SFM5_9FUNG5.740e-1255.77General transcription and DNA repair factor IIH su... [more]
A0A163M8B9_ABSGL1.140e-1153.85General transcription and DNA repair factor IIH su... [more]
A0A1X2HID9_SYNRA1.710e-1150.00General transcription and DNA repair factor IIH su... [more]
A0A367KWQ9_RHIST3.100e-1148.08General transcription and DNA repair factor IIH su... [more]
A0A1Y2H0E8_9FUNG3.820e-1144.23General transcription and DNA repair factor IIH su... [more]
A0A8H7VWE1_9FUNG3.450e-1050.00RNA polymerase II transcription factor B subunit 5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 6..58
e-value: 7.6E-13
score: 58.7
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 7..55
e-value: 4.4E-20
score: 71.5
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 7..55
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 7..58
e-value: 8.0E-20
score: 72.4
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 11..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2054contigP-wetherbeei_contig2054:3279..3644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2054.2.1mRNA_P-wetherbeei_contig2054.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig2054 3279..3644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig2054.2.1 ID=prot_P-wetherbeei_contig2054.2.1|Name=mRNA_P-wetherbeei_contig2054.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MSTGAAVRAVQGVLISCDVPTRQFILHLNKKRQFVLNELDETHLFVEASA
VQEIRWGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
IPR035935TFB5-like_sf