prot_P-wetherbeei_contig2028.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig2028.5.1
Unique Nameprot_P-wetherbeei_contig2028.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length181
Homology
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BLAST of mRNA_P-wetherbeei_contig2028.5.1 vs. uniprot
Match: A0A059LFL6_9CHLO (Transcription initiation factor IIA subunit 2 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFL6_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 4.560e-6
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0 
Query:   17 IYESLPLGDTFIEALNSMVEDYGLPPEQAEELLAAYNDVIATKYNQLDKKRKDLKASMQGKIRSFNRLDDTWRLDLKDVEIK 98
            +Y    +GD+ +EAL+S+V +  +PPE A  +L  ++  IA     LD  R   KASM+G++ ++  LD+ W   L +V IK
Sbjct:    5 LYRKTTIGDSLVEALDSLVSEGKIPPELAYRVLHEFDRSIA---KSLDT-RVTAKASMKGQLATYRYLDNVWNFVLSNVSIK 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2028.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A059LFL6_9CHLO4.560e-636.59Transcription initiation factor IIA subunit 2 n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2028contigP-wetherbeei_contig2028:5362..6238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2028.5.1mRNA_P-wetherbeei_contig2028.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig2028 5191..6238 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig2028.5.1 ID=prot_P-wetherbeei_contig2028.5.1|Name=mRNA_P-wetherbeei_contig2028.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MSGSEPASSESPPGRPIYESLPLGDTFIEALNSMVEDYGLPPEQAEELLA
AYNDVIATKYNQLDKKRKDLKASMQGKIRSFNRLDDTWRLDLKDVEIKYA
SGAVIKTDCISVYAEREKPALVTSRTSGVAAVAAAATTIGTGAGATACRR
APKQPVAAAMASAGRRGSGGGGSGDGSGGGS
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