prot_P-wetherbeei_contig19949.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19949.1.1
Unique Nameprot_P-wetherbeei_contig19949.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length320
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19949.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 219..303
e-value: 1.3E-6
score: 30.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..208
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 221..299
score: 9.149255
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 220..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19949contigP-wetherbeei_contig19949:3..1200 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19949.1.1mRNA_P-wetherbeei_contig19949.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19949 3..1202 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19949.1.1 ID=prot_P-wetherbeei_contig19949.1.1|Name=mRNA_P-wetherbeei_contig19949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
GTLQGSSLFVWGLPANAAPEDVKTAVAEFSGNAPCHVTLLARRGDGEGPH
DPFVLCAGEEGGTSGSGRNGSGGADCSAGGDDSGSPAAVVAYNSLRWGRT
VAYVTFASTAAAAGVLRACAAAAVVDSVVAADGSSSAAAGSSGAAFGGRL
CIGGVAVGLRRAFPARAIDATEPALPVPAWQPLRPAGAHGASSVDGATPA
SRPSTLRPPPLPLPLEAVVRRKVLVAGLRADVTRPQLDSAFKRFGAIERS
MVRRRPGAYPAAMEGWVIFEAKTAAKAATKCPAGELGLGEAVTVSFAPAP
EALPTRIGRPPRPVIFMKPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf