prot_P-wetherbeei_contig1940.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1940.1.1
Unique Nameprot_P-wetherbeei_contig1940.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length255
Homology
BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.380e-19
Identity = 88/266 (33.08%), Postives = 128/266 (48.12%), Query Frame = 0
Query:    1 MSELVMLELISETLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKRTKHYYALAGHLLYEFSPIVDGDAGPGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGPSYCLTMVLPLVGLAVLQGRFEGHAHALRIIRSDGRNGNAE----LPL--AVGKPGGVLRPARRPEVIFLAERADDQRAWQQWLERCTMDSHAAPTRPERRGDXXXXXXXXXXXXXWGDGGEEG------YRHLYVTCEGVEEDEGVALYQWLMTALSERM 254
            MSEL +L  +  ++GPEFAQ+HL+ P  Y++C+ G L ++H  G +L    +H+YA+A  +LYE++P  D  A P G    XXXXXXXXX              G  Y LT VLPL G+++  G+ EG+ H+L+I R+    G +     LP+  A  +   VL      EV+  A+     R W  WL        ++P+                     G GG+E       YR ++V CE +E  E  AL   L  A+  R+
Sbjct: 2765 MSELAILACLQGSMGPEFAQIHLVRPHKYSICIQGHLIRMHSSG-LLTTLERHWYAVANGILYEYTPRKD--ALPDGSNTPXXXXXXXXXVQGGGATARRP---GYPYTLTTVLPLSGVSIKTGKIEGNEHSLKIFRAPKPGGRSRDAGVLPVVTASARLASVLEEKTVDEVVLQADSHASLREWVNWL----TSQSSSPS-------------------GGGLGGQEELLERHRYRSVFVGCESLEAAEARALCDGLRGAVFTRL 3001          
BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Match: D8LME1_ECTSI (Similarities to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.340e-11
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 0
Query:   13 TLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKRTKHYYALAGHLLYEFSPIVDGDAGPGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGPSYCLTMVLPLVGLAVLQGRFEGHAHALR 134
            ++GPEFAQ+HL+ P  Y++C+ G L ++H  G +L    +H+YA+A  +LYE++P  D  A P G    XXXXXXXXX              G  Y LT VLPL G+++  GR EG+ H+L+
Sbjct:  635 SMGPEFAQIHLVRPHKYSICLQGHLIRMHSSG-LLTTLERHWYAVANGILYEYTPRKD--ALPDGSNTPXXXXXXXXXVKGGGATARRP---GYPYTLTTVLPLSGVSIKTGRIEGNEHSLK 750          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE5.380e-1933.08PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LME1_ECTSI1.340e-1142.62Similarities to vacuolar protein sorting-associate... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1940contigP-wetherbeei_contig1940:831..1595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1940.1.1mRNA_P-wetherbeei_contig1940.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1940 790..1886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1940.1.1 ID=prot_P-wetherbeei_contig1940.1.1|Name=mRNA_P-wetherbeei_contig1940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MSELVMLELISETLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKR
TKHYYALAGHLLYEFSPIVDGDAGPGGGNSGGSSGGSSSGGGGGGGGGSG
AAAAGPSYCLTMVLPLVGLAVLQGRFEGHAHALRIIRSDGRNGNAELPLA
VGKPGGVLRPARRPEVIFLAERADDQRAWQQWLERCTMDSHAAPTRPERR
GDDGGGGGRSAGGGGWGDGGEEGYRHLYVTCEGVEEDEGVALYQWLMTAL
SERM*
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