prot_P-wetherbeei_contig19157.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19157.1.1
Unique Nameprot_P-wetherbeei_contig19157.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length126
Homology
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BLAST of mRNA_P-wetherbeei_contig19157.1.1 vs. uniprot
Match: UPI001FB87F17 (LuxR family transcriptional regulator n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI001FB87F17)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-5
Identity = 30/119 (25.21%), Postives = 50/119 (42.02%), Query Frame = 0 
Query:    8 FRFAETAQRAETLDQIDDALLKILSRFGIGHFVLYQATDRGRRPTGARIAGPMHREWRKHYVENGMANYDELLSYGLGTVAPTTWTKFKAETAMSDGQKLLFDEAGSFGLQDGFYLPIH 126
            F + +  QR +    +  A    ++  G+  F L +            I   M   W++ Y E   A  D  +     +V P  W++  A +     Q+ ++DEAGSFGL  G  +PI+
Sbjct:    6 FEYIDRLQRLDEPQAVRAAFADAITALGVTSFALLEVNPNPEAFQRTVIDDTMPVGWKERYFEQKYAAIDPCVRAIASSVEPFLWSEALARSRREKPQRRIYDEAGSFGLNQGLCVPIY 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19157.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FB87F171.690e-525.21LuxR family transcriptional regulator n=1 Tax=Rhiz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036693Transcription factor LuxR-like, autoinducer-binding domain superfamilyGENE3D3.30.450.80coord: 3..126
e-value: 5.1E-20
score: 73.4
IPR036693Transcription factor LuxR-like, autoinducer-binding domain superfamilySUPERFAMILY75516Pheromone-binding domain of LuxR-like quorum-sensing transcription factorscoord: 8..126
IPR005143Transcription factor LuxR-like, autoinducer-binding domainPFAMPF03472Autoind_bindcoord: 21..126
e-value: 6.1E-15
score: 55.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19157contigP-wetherbeei_contig19157:925..1302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19157.1.1mRNA_P-wetherbeei_contig19157.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19157 925..1302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19157.1.1 ID=prot_P-wetherbeei_contig19157.1.1|Name=mRNA_P-wetherbeei_contig19157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
AIVAEPVFRFAETAQRAETLDQIDDALLKILSRFGIGHFVLYQATDRGRR
PTGARIAGPMHREWRKHYVENGMANYDELLSYGLGTVAPTTWTKFKAETA
MSDGQKLLFDEAGSFGLQDGFYLPIH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036693TF_LuxR_autoind-bd_dom_sf
IPR005143TF_LuxR_autoind-bd_dom