prot_P-wetherbeei_contig19107.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19107.1.1
Unique Nameprot_P-wetherbeei_contig19107.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length136
Homology
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A2E0RW76_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RW76_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   72 AIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 133
            A D  DEL D +  L +RQ+A +V+RY LDL+EADIA AL+CRP TV+S+  R L  +RKE+
Sbjct:  105 ASDPVDELIDIIADLSYRQRAVVVMRYWLDLSEADIAQALECRPGTVKSLHSRALAAIRKEL 166          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A7K1B8P8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A7K1B8P8_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0
Query:   78 ELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 133
            EL DAL+ LP RQ+ A+VLRY  DL EA+IA  LDCRP+TVR+++ RGL  LR  +
Sbjct:  104 ELRDALQQLPARQRTAIVLRYLCDLPEAEIADILDCRPTTVRTLVHRGLADLRTRI 159          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538IX50_9ACTN (SigE family RNA polymerase sigma factor n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IX50_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 3.550e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0
Query:   66 IAAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEVVS 135
            I A   +++    L  ALR LP RQ+AALVLR++ D +EA  A  + CRP TV+S++ R L+TLRKE+ S
Sbjct:  101 IGAPAHSVEDRQALAAALRKLPQRQRAALVLRFYEDQSEAQTADLIGCRPGTVKSLVSRALETLRKEIGS 170          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542DXX0_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Lapillicoccus jejuensis TaxID=402171 RepID=A0A542DXX0_9MICO)

HSP 1 Score: 66.6 bits (161), Expect = 5.070e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   73 IDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKE 132
            +D    L   L  LP RQ+AALVLRY+LDL E +IATA+ CRP+TVRS++ RGL  LR +
Sbjct:  103 LDDRSALWLMLLTLPERQRAALVLRYYLDLPETEIATAIGCRPATVRSLVSRGLAALRTQ 162          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1H0TQV6_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Klenkia soli TaxID=1052260 RepID=A0A1H0TQV6_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 5.760e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   75 VHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 130
            V D+L   L GLP RQ+AALVLRY+ DL + +IA  L CRP TVRS++ RGL TLR
Sbjct:  112 VDDQLWHRLPGLPARQRAALVLRYYEDLDDDEIAECLACRPGTVRSLVSRGLATLR 167          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1M5GG82_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Jatrophihabitans endophyticus TaxID=1206085 RepID=A0A1M5GG82_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 7.200e-11
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   77 DELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 130
            D+L D L GLP RQ+AALVLR+  DL +AD A AL CR  TVRS+I RGL TLR
Sbjct:  129 DQLRDVLAGLPDRQRAALVLRFFEDLDDADTADALGCRVGTVRSLISRGLATLR 182          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538B126_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B126_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 1.690e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0
Query:   82 ALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 133
            AL  LP RQ+AA+VLR++LDL+EA+ A AL CRP T +S++ RGL TLR E+
Sbjct:  112 ALLRLPHRQRAAIVLRFYLDLSEAETAEALRCRPGTAKSLVSRGLRTLRNEL 163          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542ZHK9_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Oryzihumus leptocrescens TaxID=297536 RepID=A0A542ZHK9_9MICO)

HSP 1 Score: 64.3 bits (155), Expect = 3.980e-10
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0
Query:   64 TVIAAQELAI--DVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 133
            T  +A+E A+  +  +EL  ALRGLP RQ+  LVLRY+LDLTEA IA AL   P +V+S   RGL +LR ++
Sbjct:  101 TEASAEERAVAHEQGEELLSALRGLPRRQREVLVLRYYLDLTEAQIADALGISPGSVKSHAHRGLSSLRTQM 172          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A849A337_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Nakamurella aerolata TaxID=1656892 RepID=A0A849A337_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 4.090e-10
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   67 AAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 133
            +AQ +A   HDEL   L  LP +QQAAL LRY+LDL++  IA  L C+P++VR  I RGL  LR E+
Sbjct:  108 SAQRIA--EHDELAQQLASLPKQQQAALALRYYLDLSDDAIAAELGCKPASVRGYISRGLAALRIEL 172          
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A372G7J9_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomadura TaxID=1988 RepID=A0A372G7J9_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 5.040e-10
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 0
Query:   21 DRSGC---VRGLAIDSHRR--REPGRLPAP----LGHQRLHSTHRHNSVVSRTVIA--------------AQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRK 131
            DR+G    V+ +    HRR  R PGRLPA     L + R    +   +++ R  +A              +  +  D    +  AL GLP RQ+ A+VLRY+LDL+EA+IA A+  R  TV+S I RGLD LR+
Sbjct:   51 DRAGAEDVVQDVYARLHRRAARGPGRLPAAPPELLAYARASVLNACRTLLRRRALARGLVQAPQPVWSAESDAMLADDRRRVLQALVGLPVRQREAIVLRYYLDLSEAEIAAAMGVRAGTVKSTISRGLDALRR 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0RW76_9ACTN1.610e-1154.84Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1B8P8_9ACTN2.750e-1158.93Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A538IX50_9ACTN3.550e-1148.57SigE family RNA polymerase sigma factor n=2 Tax=Ac... [more]
A0A542DXX0_9MICO5.070e-1156.67RNA polymerase sigma-70 factor (Sigma-E family) n=... [more]
A0A1H0TQV6_9ACTN5.760e-1160.71RNA polymerase sigma-70 factor, sigma-E family n=2... [more]
A0A1M5GG82_9ACTN7.200e-1164.81RNA polymerase sigma-70 factor, sigma-E family n=1... [more]
A0A538B126_9ACTN1.690e-1059.62SigE family RNA polymerase sigma factor n=1 Tax=Ac... [more]
A0A542ZHK9_9MICO3.980e-1051.39RNA polymerase sigma-70 factor (Sigma-E family) n=... [more]
A0A849A337_9ACTN4.090e-1052.24SigE family RNA polymerase sigma factor n=1 Tax=Na... [more]
A0A372G7J9_9ACTN5.040e-1037.31RNA polymerase sigma factor n=3 Tax=Actinomadura T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 77..128
e-value: 3.4E-11
score: 42.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 55..134
e-value: 2.5E-15
score: 57.8
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 76..130
e-value: 5.63029E-9
score: 47.099
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 72..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19107contigP-wetherbeei_contig19107:330..737 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19107.1.1mRNA_P-wetherbeei_contig19107.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19107 330..737 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19107.1.1 ID=prot_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MESAVAHGLRIGGIADARRRDRSGCVRGLAIDSHRRREPGRLPAPLGHQR
LHSTHRHNSVVSRTVIAAQELAIDVHDELGDALRGLPWRQQAALVLRYHL
DLTEADIATALDCRPSTVRSIIKRGLDTLRKEVVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013249RNA_pol_sigma70_r4_t2
IPR036388WH-like_DNA-bd_sf
IPR013324RNA_pol_sigma_r3/r4-like