prot_P-wetherbeei_contig1842.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1842.3.1
Unique Nameprot_P-wetherbeei_contig1842.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length208
Homology
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BLAST of mRNA_P-wetherbeei_contig1842.3.1 vs. uniprot
Match: A0A836CGC6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.460e-5
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 0 
Query:   81 CAAVAVFNGMQGGLIGAFVGGATGLAKAASHGVRGADLRL---HARGGAVSYGASFAGFLATFEGTKCVSSALRGGKRDVLNTAIAGFASGAVAAVARRQVRHAVPQGVAV-AVGAVALEVFF 199
            C  V   +G++G L+G   G  +G  K A    R +   L   H R    +   S A F + ++G KC S  LRGGK+DV NT +AGFA G    +A +Q    V  G A   V A+ LE  F
Sbjct:   88 CLLVGFVSGVEGALLGGLFGAVSG--KMAETQARRSGKPLIAGHVRSTTKAGARSGAAFFSVYQGVKCASCQLRGGKKDVFNTGVAGFAIGFYQGLAAKQPLPRVMAGAATFGVIAMMLENIF 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1842.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CGC6_9STRA5.460e-536.59Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 85..190
e-value: 2.0E-8
score: 34.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1842contigP-wetherbeei_contig1842:5366..6565 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1842.3.1mRNA_P-wetherbeei_contig1842.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1842 4956..6565 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1842.3.1 ID=prot_P-wetherbeei_contig1842.3.1|Name=mRNA_P-wetherbeei_contig1842.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=208bp
FDGFAPQPSDVEDRYGDREAPPDFDRDSGDDGAPISSSPSAGGAPPPAGD
SASGSGGGGDASAAADNLGGSAGRPFPLPLCAAVAVFNGMQGGLIGAFVG
GATGLAKAASHGVRGADLRLHARGGAVSYGASFAGFLATFEGTKCVSSAL
RGGKRDVLNTAIAGFASGAVAAVARRQVRHAVPQGVAVAVGAVALEVFFN
IGSGSSR*
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