prot_P-wetherbeei_contig1840.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1840.1.1
Unique Nameprot_P-wetherbeei_contig1840.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length262
Homology
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BLAST of mRNA_P-wetherbeei_contig1840.1.1 vs. uniprot
Match: D7FQD0_ECTSI (Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.040e-24
Identity = 69/173 (39.88%), Postives = 93/173 (53.76%), Query Frame = 0 
Query:   28 RLTEIYIHGFRSFRAPTTVPVRAAGGLICIAGPNGSGKSTLIDAVLFGLGAAAADVGARQAADLATAPQAEVRLTFRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPLVVSSSVSKATGQRAYALGGRRLPKARFDALVASRIGLALDAPCWRIGQHSVARV 200
            +L  + + GF+S+ +   V V    GL CI GPNGSGKSTL++A+LFGLG  A  +GA+Q A+LA+A  AEV L FR  +                                   DA   VSS+VS+A GQR YA  G+RLPK RFD  + +R+G+A   P WR+ Q  + R+
Sbjct:   35 KLQSVTVSGFKSWTSTARV-VFGHDGLSCITGPNGSGKSTLLNAILFGLGENANQLGAKQNAELASAAHAEVELLFRGVSRGVS-------------------------------DAK--VSSAVSRANGQRTYAFNGQRLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1840.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD0_ECTSI1.040e-2439.88Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 27..249
e-value: 9.2E-19
score: 70.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 28..239
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 29..95
e-value: 1.1E-11
score: 44.6
NoneNo IPR availablePANTHERPTHR43941STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2coord: 29..256
NoneNo IPR availablePANTHERPTHR43941:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2coord: 29..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1840contigP-wetherbeei_contig1840:1812..2747 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1840.1.1mRNA_P-wetherbeei_contig1840.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1840 699..2747 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1840.1.1 ID=prot_P-wetherbeei_contig1840.1.1|Name=mRNA_P-wetherbeei_contig1840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
MLNTALMASSAAAEASSTPQLPAPPPLRLTEIYIHGFRSFRAPTTVPVRA
AGGLICIAGPNGSGKSTLIDAVLFGLGAAAADVGARQAADLATAPQAEVR
LTFRPAAAAAAAGGGNARGSGNIVAACGSSAAATATAAAAAADAPLVVSS
SVSKATGQRAYALGGRRLPKARFDALVASRIGLALDAPCWRIGQHSVARV
LAATPAVLHGALCEAAGTAALNRHRLKAIRKIACWRTALIGVQANVARLE
DAVRRDAALLNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003395RecF/RecN/SMC_N