prot_P-wetherbeei_contig17994.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig17994.1.1
Unique Name	prot_P-wetherbeei_contig17994.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	162

Homology

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A1F4CXY1_9PROT (Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CXY1_9PROT)

HSP 1 Score: 234 bits (597), Expect = 2.870e-76
Identity = 126/161 (78.26%), Postives = 137/161 (85.09%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRLTG LAAK+PPQV+VD GGV YE+DVPMSTFYNLPA+GE V L THLVVREDAH+L+GF T EERSAFR+LIRISGVGARTAL+VLSGLSV DLA AV  QDG+RL KVPGIGKKTAERLLLELKGKLA+ LPG      A   ASDV+NALL LGYS
Sbjct:    2 IGRLTGRLAAKHPPQVLVDVGGVAYEVDVPMSTFYNLPASGEAVSLFTHLVVREDAHVLYGFATLEERSAFRQLIRISGVGARTALAVLSGLSVADLAQAVMLQDGSRLVKVPGIGKKTAERLLLELKGKLAEALPGP-----AQERASDVVNALLGLGYS 157

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: UPI00193BDDC1 (Holliday junction branch migration protein RuvA n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193BDDC1)

HSP 1 Score: 234 bits (597), Expect = 3.390e-76
Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRLTG LAAK PPQ++VD  GVGYE+DVPMSTFYNLPA G+KVVLLTH  VRED H L+GFG+E ER AFR+L++ISGVGARTAL+VLSGLSV DLA AVA Q+  RLTKVPGIGKKTAERLLLELKGKLA+ +P A  A AA     D+LNALLALGY+
Sbjct:    2 IGRLTGTLAAKTPPQILVDVNGVGYEVDVPMSTFYNLPAAGDKVVLLTHHAVREDGHFLYGFGSEAERFAFRQLLKISGVGARTALAVLSGLSVADLAQAVAAQEAGRLTKVPGIGKKTAERLLLELKGKLAEAVPAAAAAAAAGDSRHDILNALLALGYN 162

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: UPI0019A286DF (Holliday junction branch migration protein RuvA n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A286DF)

HSP 1 Score: 231 bits (588), Expect = 6.950e-75
Identity = 124/161 (77.02%), Postives = 131/161 (81.37%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRL+G L +KNPPQV++D  GVGYEIDVPMSTFYNLPATGE   L THLVVREDAH+L+GF T EERS FRKLIRISGVGARTALSVLSGLSV DLA AV  QD  RLTKVPGIGKKTAERLLLELKGKL+D LP     G      SDVLNALL LGYS
Sbjct:    2 IGRLSGTLVSKNPPQVLLDVAGVGYEIDVPMSTFYNLPATGEAATLHTHLVVREDAHVLYGFATLEERSVFRKLIRISGVGARTALSVLSGLSVADLAQAVTLQDTGRLTKVPGIGKKTAERLLLELKGKLSDTLPAETAKGGG----SDVLNALLGLGYS 158

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A8J3AXM3_9BURK (Holliday junction ATP-dependent DNA helicase RuvA n=3 Tax=Oxalicibacterium TaxID=223927 RepID=A0A8J3AXM3_9BURK)

HSP 1 Score: 230 bits (586), Expect = 1.600e-74
Identity = 118/161 (73.29%), Postives = 135/161 (83.85%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRL+G+L  KNPPQ++VD  GVGYE++VPMSTFYNLP   EKV LLTHLVVREDAHILFGFGT EER+ F++LI+ISG+GARTALS+LSG+SV DLA AV  Q+  RLTKVPGIGKKTAERLLLELKGKL   +   G A AA+  +SDVLNALLALGYS
Sbjct:    2 IGRLSGILLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLNEKVALLTHLVVREDAHILFGFGTSEERNTFKELIKISGIGARTALSILSGMSVADLAQAVTLQEAGRLTKVPGIGKKTAERLLLELKGKLGADIGATGGAAAASDTSSDVLNALLALGYS 162

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A401JFF7_9PROT (Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Sulfuriferula TaxID=1778653 RepID=A0A401JFF7_9PROT)

HSP 1 Score: 229 bits (584), Expect = 3.120e-74
Identity = 118/161 (73.29%), Postives = 138/161 (85.71%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGR+TG L  K+PPQ++VDA GVGYEIDVPMSTFYNLPA GE+V L THLVVREDA +L+GFG+E ER+ FR+LI+I+GVGA+ AL+VLSG++ N+LA AVA QD  RLTK+PGIGKKTAERLLLELKGKLAD LPGAG +G AA    DVLNALLALGY+
Sbjct:    2 IGRITGTLIEKHPPQIVVDAHGVGYEIDVPMSTFYNLPAIGERVALHTHLVVREDAQLLYGFGSEAERATFRQLIKITGVGAKMALAVLSGMNANELAQAVAMQDTGRLTKIPGIGKKTAERLLLELKGKLADALPGAGQSGVAAA-GGDVLNALLALGYN 161

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A522VXB2_9PROT (Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VXB2_9PROT)

HSP 1 Score: 229 bits (584), Expect = 3.220e-74
Identity = 116/161 (72.05%), Postives = 139/161 (86.34%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRLTG L A++PPQV++D GGV YE+DVPMSTFYNLP TGE V L THL+VREDAH L+GF T +ER+AFR+LIRISG+GARTAL+VLSGLSV++LA AVA Q+ ARLTKVPGIGKKTAERLLLELKG+L + LPG+G A A  + ++D+L+ALL LGYS
Sbjct:    2 IGRLTGRLVARHPPQVLLDVGGVAYEVDVPMSTFYNLPGTGEAVTLHTHLLVREDAHTLYGFATLDERTAFRQLIRISGIGARTALAVLSGLSVSELAQAVALQESARLTKVPGIGKKTAERLLLELKGRLVEALPGSGAAAAPDSSSADILHALLGLGYS 162

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A5C7K2M7_9RHOO (Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7K2M7_9RHOO)

HSP 1 Score: 228 bits (582), Expect = 6.280e-74
Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGRL+G LA KNPPQ++VD GGVGYE+DVPMSTFYNLPA+GEKV LLTH  VRED H L+GFG+E ER AFR+L++ISGVGARTALSVLSGLSV DLA AVA Q+  RLTKVPGIGKKTAERLLLELKGKLAD +P A  A   +    D+LNALLALGY+
Sbjct:    2 IGRLSGTLAEKNPPQILVDVGGVGYEVDVPMSTFYNLPASGEKVTLLTHHAVREDGHFLYGFGSEAERFAFRQLLKISGVGARTALSVLSGLSVADLAQAVAMQEAGRLTKVPGIGKKTAERLLLELKGKLADTVPNA-TALVQSDSRHDILNALLALGYN 161

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A521Z5W1_9PROT (Holliday junction ATP-dependent DNA helicase RuvA n=4 Tax=Bacteria TaxID=2 RepID=A0A521Z5W1_9PROT)

HSP 1 Score: 227 bits (578), Expect = 2.240e-73
Identity = 123/165 (74.55%), Postives = 137/165 (83.03%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPA----SDVLNALLALGYS 162
            IGR++G LA K PPQV+VD GGV YE+DVPMSTFY+LPATGE + L THL+VREDAH+L+GF T EERSAFR+LIRISGVGARTAL+VLSGLSV DLA AV  QD ARLT+VPGIGKKTAERLLLELKGKLA+V         AATPA    SD+LNALLALGYS
Sbjct:    2 IGRISGKLAVKQPPQVLVDVGGVAYELDVPMSTFYSLPATGEPITLYTHLIVREDAHMLYGFATLEERSAFRQLIRISGVGARTALAVLSGLSVADLAQAVVMQDAARLTRVPGIGKKTAERLLLELKGKLAEV---------AATPAQEHASDILNALLALGYS 157

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A3S9HGX9_9BURK (Holliday junction ATP-dependent DNA helicase RuvA n=15 Tax=Burkholderiales TaxID=80840 RepID=A0A3S9HGX9_9BURK)

HSP 1 Score: 227 bits (578), Expect = 2.640e-73
Identity = 115/161 (71.43%), Postives = 135/161 (83.85%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPASDVLNALLALGYS 162
            IGR+ G+L  KNPPQ++VD  GVGYEIDVPMSTFYNLPA GEKV+LLTHL +REDAH+LFGFG+ EER+ FR+LI+ISGVG+RTAL++LSG+SV DLA A+  Q+  RLT+VPGIGKKTAERLLLELKGKL   L  A  A AA   +SD+LNALLALGYS
Sbjct:    2 IGRIAGILIEKNPPQLLVDCQGVGYEIDVPMSTFYNLPALGEKVILLTHLAIREDAHVLFGFGSSEERATFRQLIKISGVGSRTALAILSGMSVADLAQAITLQEAGRLTRVPGIGKKTAERLLLELKGKLGADLGAASAAIAAGDHSSDILNALLALGYS 162

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BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Match: A0A6N6LG20_9PROT (Holliday junction ATP-dependent DNA helicase RuvA n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A6N6LG20_9PROT)

HSP 1 Score: 227 bits (578), Expect = 3.210e-73
Identity = 115/167 (68.86%), Postives = 137/167 (82.04%), Query Frame = 0

Query:    2 IGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTHLVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAHAVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLP------GAGPAGAAATPASDVLNALLALGYS 162
            IGRLTG L  KNPPQ++VDAGGVGYE+DVPMSTFY+LPATG+KV L THL +RED H L+GFG++EER+AFR+LI++SG+GARTAL+VLSGLSV DLA A+A Q+  RL K+PGIGKKTAERLLLELK KL   LP      G+  AGAA    SD+LNAL+ALGY+
Sbjct:    2 IGRLTGTLLEKNPPQILVDAGGVGYEVDVPMSTFYHLPATGQKVSLHTHLAIREDGHFLYGFGSDEERAAFRQLIKVSGIGARTALAVLSGLSVTDLAQAIALQEAGRLVKIPGIGKKTAERLLLELKDKLGKALPTVAASLGSSGAGAAPDARSDILNALMALGYN 168

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig17994.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1F4CXY1_9PROT	2.870e-76	78.26	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
UPI00193BDDC1	3.390e-76	74.53	Holliday junction branch migration protein RuvA n=...	[more]
UPI0019A286DF	6.950e-75	77.02	Holliday junction branch migration protein RuvA n=...	[more]
A0A8J3AXM3_9BURK	1.600e-74	73.29	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A401JFF7_9PROT	3.120e-74	73.29	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A522VXB2_9PROT	3.220e-74	72.05	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A5C7K2M7_9RHOO	6.280e-74	74.53	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A521Z5W1_9PROT	2.240e-73	74.55	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A3S9HGX9_9BURK	2.640e-73	71.43	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]
A0A6N6LG20_9PROT	3.210e-73	68.86	Holliday junction ATP-dependent DNA helicase RuvA ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	SMART	SM00278	HhH1_4	coord: 108..127 e-value: 0.0012 score: 28.1 coord: 73..92 e-value: 32.0 score: 13.4
IPR013849	DNA helicase, Holliday junction RuvA type, domain I, bacterial	PFAM	PF01330	RuvA_N	coord: 2..62 e-value: 3.8E-19 score: 68.6
None	No IPR available	PFAM	PF14520	HHH_5	coord: 72..129 e-value: 2.4E-18 score: 66.4
None	No IPR available	GENE3D	1.10.150.20		coord: 66..146 e-value: 9.6E-27 score: 94.9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 1..65 e-value: 1.8E-21 score: 77.8
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..63
IPR000085	Bacterial DNA recombination protein RuvA	TIGRFAM	TIGR00084	TIGR00084	coord: 1..161 e-value: 4.7E-49 score: 164.4
IPR000085	Bacterial DNA recombination protein RuvA	HAMAP	MF_00031	DNA_helic_RuvA	coord: 1..161 score: 23.540716
IPR010994	RuvA domain 2-like	SUPERFAMILY	47781	RuvA domain 2-like	coord: 66..136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig17994	contig	P-wetherbeei_contig17994:2..487 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig17994.1.1	mRNA_P-wetherbeei_contig17994.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig17994 2..487 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig17994.1.1 ID=prot_P-wetherbeei_contig17994.1.1|Name=mRNA_P-wetherbeei_contig17994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
VIGRLTGVLAAKNPPQVMVDAGGVGYEIDVPMSTFYNLPATGEKVVLLTH
LVVREDAHILFGFGTEEERSAFRKLIRISGVGARTALSVLSGLSVNDLAH
AVATQDGARLTKVPGIGKKTAERLLLELKGKLADVLPGAGPAGAAATPAS
DVLNALLALGYS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003583	Hlx-hairpin-Hlx_DNA-bd_motif
IPR013849	DNA_helicase_Holl-junc_RuvA_I
IPR012340	NA-bd_OB-fold
IPR000085	RuvA
IPR010994	RuvA_2-like