prot_P-wetherbeei_contig17423.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig17423.1.1
Unique Nameprot_P-wetherbeei_contig17423.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length81
Homology
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A445MQT3_9DELT (Uncharacterized HTH-type transcriptional regulator y4mF n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MQT3_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-8
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0
Query:   17 SGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 81
            SG +G   RS RK  GL++  A+   G   RF+ ELE GK TA + KVLQ L GLGL++ + S E
Sbjct:    8 SGDIGRIIRSKRKRDGLTLAEASALCGVGYRFLSELENGKHTAALGKVLQVLRGLGLEIQIRSRE 72          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI001D18A9C3 (helix-turn-helix transcriptional regulator n=2 Tax=Alcanivorax marinus TaxID=1177169 RepID=UPI001D18A9C3)

HSP 1 Score: 54.3 bits (129), Expect = 1.060e-7
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   15 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 75
            E + +LGA+ R+ARKA+GL+    A+  G  PRFV ELE+GKPTAR++   +    LGL L
Sbjct:   31 ESASELGARIRAARKAQGLTQVDLAEIAGVGPRFVSELERGKPTARLELTFRITRLLGLDL 91          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A651FR81_9DELT (Transcriptional regulator n=3 Tax=Desulfovibrionales TaxID=213115 RepID=A0A651FR81_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-7
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 0
Query:   20 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQL 75
            LG  A   RK  GL+    A + G   RFV ELE+GKPT R+DK LQ L GLGL+L
Sbjct:   11 LGRIAAEKRKLDGLTQADLAGYCGVGERFVGELERGKPTVRLDKALQVLEGLGLEL 66          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00140CEBFE (helix-turn-helix transcriptional regulator n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI00140CEBFE)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-7
Identity = 31/60 (51.67%), Postives = 34/60 (56.67%), Query Frame = 0
Query:   18 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 77
            G+L A  R  RK  GL     A   GCS RF+  LE GKPT R+DKVL  L  LGL L V
Sbjct:   17 GELAAHVRRRRKHLGLRQGELADLAGCSERFIHMLEAGKPTVRLDKVLDVLRVLGLHLEV 76          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A3A4ZJC9_9DELT (Transcriptional regulator n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4ZJC9_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 1.230e-7
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 0
Query:   20 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 77
            +GA  R  RK  GL++  AA     + RF+  LE GKPT RMDKVL  L+ LGL LS+
Sbjct:   11 IGAAVRGRRKTDGLTLVEAAGLCNVNYRFLSNLENGKPTVRMDKVLDVLTALGLDLSI 68          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A4Q5XNF7_9DELT (Transcriptional regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XNF7_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 1.910e-7
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0
Query:   19 QLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 77
            +LGA  R  RK  GL+  A A+  GC P FV  LE+GKP+ R+DK+L  L  LG+ ++V
Sbjct:   10 RLGAAVRKRRKLLGLTQEAVARAAGCGPVFVYNLERGKPSLRLDKLLGILRVLGMDIAV 68          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI00192EBFED (type II toxin-antitoxin system Y4mF family antitoxin n=1 Tax=Pseudoxanthomonas koreensis TaxID=266061 RepID=UPI00192EBFED)

HSP 1 Score: 52.8 bits (125), Expect = 2.460e-7
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   18 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 81
            G LG   R ARKA GL+    A   G  PRF+ ELE+GK +A + KVL  L+ LGL+L +  A+
Sbjct:    6 GTLGMAVRQARKAHGLTQAGLAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLRLLLAGAD 69          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A163VI11_9BACT (HTH cro/C1-type domain-containing protein n=3 Tax=Candidatus Fermentibacteria TaxID=1729712 RepID=A0A163VI11_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.900e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0
Query:   15 ELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSV 77
            E +  LG   RS RKA G++   A+  LG   RF+ ELE+GKPTA + KVLQ +  LGL L V
Sbjct:   14 ETTEDLGKMLRSKRKALGMTQERASGLLGVGIRFLSELERGKPTAEIGKVLQVVRRLGLDLCV 76          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: A0A5C5U7U5_9GAMM (Helix-turn-helix transcriptional regulator n=2 Tax=Luteimonas marina TaxID=488485 RepID=A0A5C5U7U5_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-7
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   18 GQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 81
            G LGA  R ARK  GL+    A   G  PRF+ ELE+GK +A + KVL  L+ LGL L +  A+
Sbjct:    7 GTLGAAVRQARKTHGLTQAELAGLAGTGPRFISELERGKASAELGKVLDVLAVLGLHLLLTGAD 70          
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Match: UPI000F656E80 (helix-turn-helix transcriptional regulator n=1 Tax=Brevundimonas fluminis TaxID=2487274 RepID=UPI000F656E80)

HSP 1 Score: 52.4 bits (124), Expect = 3.410e-7
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0
Query:   20 LGAQARSARKAKGLSIRAAAQHLGCSPRFVQELEQGKPTARMDKVLQTLSGLGLQLSVHSAE 81
            LG++ R+ RK  GL     A   G   RF+ +LE+GKPT R+DKVL  L  LGL L V S++
Sbjct:    6 LGSRVRAERKRLGLRQDQLAASAGVGLRFLVDLERGKPTVRLDKVLSVLEALGLTLDVRSSD 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17423.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445MQT3_9DELT1.510e-847.69Uncharacterized HTH-type transcriptional regulator... [more]
UPI001D18A9C31.060e-749.18helix-turn-helix transcriptional regulator n=2 Tax... [more]
A0A651FR81_9DELT1.140e-753.57Transcriptional regulator n=3 Tax=Desulfovibrional... [more]
UPI00140CEBFE1.170e-751.67helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A3A4ZJC9_9DELT1.230e-750.00Transcriptional regulator n=1 Tax=Desulfobacterace... [more]
A0A4Q5XNF7_9DELT1.910e-747.46Transcriptional regulator n=1 Tax=Myxococcales bac... [more]
UPI00192EBFED2.460e-746.88type II toxin-antitoxin system Y4mF family antitox... [more]
A0A163VI11_9BACT2.900e-749.21HTH cro/C1-type domain-containing protein n=3 Tax=... [more]
A0A5C5U7U5_9GAMM3.100e-746.88Helix-turn-helix transcriptional regulator n=2 Tax... [more]
UPI000F656E803.410e-746.77helix-turn-helix transcriptional regulator n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 13..81
e-value: 3.9E-12
score: 47.5
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 18..78
NoneNo IPR availablePFAMPF13560HTH_31coord: 19..74
e-value: 4.2E-9
score: 36.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 25..78
score: 9.579818
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 21..76
e-value: 1.5896E-6
score: 39.0734

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17423contigP-wetherbeei_contig17423:603..845 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17423.1.1mRNA_P-wetherbeei_contig17423.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig17423 603..845 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig17423.1.1 ID=prot_P-wetherbeei_contig17423.1.1|Name=mRNA_P-wetherbeei_contig17423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MSRPRPPASLDPNAELSGQLGAQARSARKAKGLSIRAAAQHLGCSPRFVQ
ELEQGKPTARMDKVLQTLSGLGLQLSVHSAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010982Lambda_DNA-bd_dom_sf
IPR001387Cro/C1-type_HTH