prot_P-wetherbeei_contig1683.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1683.1.1
Unique Nameprot_P-wetherbeei_contig1683.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length722
Homology
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BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.240e-7
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:  186 KGAARRLMAEAVSMCEAIDDGFVVILKSRRRASAADSSERADAAAAGAGAPTTDAGDKPYAARSKRDIAEHYGIAWSTLQPRL 268
            +G ARR+M EA+++CEA+D+GF+V+L ++           A+++  G+  P     D P    SKR+I+E++GIAWSTLQPRL
Sbjct:  312 QGEARRIMMEAIALCEAVDEGFMVVLPAKPVL-------HAESSTRGSAEPAMVDSD-PVCLGSKREISEYFGIAWSTLQPRL 386
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BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Match: A0A6H5JVN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.190e-7
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:  172 RLRPEDGKKRVNYTKGAARRLMAEAVSMCEAIDDGFVVILKSRRR 216
            R+ PE+GKKRVNY KG ARR+M EAVS+CEA+  G+ V+   RRR
Sbjct:   41 RVVPEEGKKRVNYGKGDARRIMEEAVSLCEAMALGYEVVFHGRRR 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWV1_9STRA1.240e-743.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JVN1_9PHAE4.190e-762.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 320..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 606..681
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 544..574
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 434..505
score: 8.991783

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1683contigP-wetherbeei_contig1683:4524..6689 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1683.1.1mRNA_P-wetherbeei_contig1683.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1683 4524..6690 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1683.1.1 ID=prot_P-wetherbeei_contig1683.1.1|Name=mRNA_P-wetherbeei_contig1683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=722bp
RRGPHLQVRVLVPRRCAGAAPSATAPPSHSAWMNALATAAAAAATAGKPP
LRGWSREEAALAASAESSGQSSWLSSQEDSGGGARRRAFSLVCAREPPAL
IPRHADEWGSVSPEPAKRVPASATPDPALPLPRSRSSAGAKKAAAAMAAA
AAAAAAVAMASGVVAPTLPPGRLRPEDGKKRVNYTKGAARRLMAEAVSMC
EAIDDGFVVILKSRRRASAADSSERADAAAAGAGAPTTDAGDKPYAARSK
RDIAEHYGIAWSTLQPRLGKGEAGYGGGSYGGGLAAAATDPVAAATAAAS
GAAGGSSGPAVRQSVKRARAAAAEAAAEAAVEAAAEAAAEAENVGESPRM
PSSKSSRGGSTEKRPRRVPAADSAVQTRASSVDDDDSETGCRGRGVDEAR
GNGGGSNGGGRGGGGGAATGAATGGRSSNGSVVGNSDGERRLPEAVERLM
TEHVMWMLDGGYSVTLEGVADCARQLGALCNVACFVAGESWLAGFAQRHP
ELARRCTANAAAAARCRRGKKRASETSLLLRNCLPFASLPDVEGGGNGSG
GGGGDAFHEGRPPGPADAATPVFTDDKRQHGCFAGLNARSVPEFFSGHME
RLLALGPPCPPGGIDSSGDDNDDDGGGDGEASNAGAGNDDGVGDKGDAGD
GNGDGGGDKGDVGDGNGDDDEDDALRRIYLGGDGKSMNGSIASGGVGRLN
GVANRPPLLFIDDRCGGSGINA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom