prot_P-wetherbeei_contig1645.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1645.1.1
Unique Nameprot_P-wetherbeei_contig1645.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length465
Homology
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BLAST of mRNA_P-wetherbeei_contig1645.1.1 vs. uniprot
Match: F0ZD88_DICPU (RING-type domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZD88_DICPU)

HSP 1 Score: 50.8 bits (120), Expect = 7.340e-5
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 0 
Query:  381 CGICQETADRPHSAACNHVCCRECWMQWL 409
            C ICQ   D P+ + CNHVCC ECW QWL
Sbjct:    2 CPICQSAYDNPYYSPCNHVCCYECWNQWL 30
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1645.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0ZD88_DICPU7.340e-562.07RING-type domain-containing protein (Fragment) n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 370..458
e-value: 1.6E-12
score: 48.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..278
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 375..456
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 381..445
score: 9.317383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1645contigP-wetherbeei_contig1645:2979..4373 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1645.1.1mRNA_P-wetherbeei_contig1645.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1645 2658..4653 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1645.1.1 ID=prot_P-wetherbeei_contig1645.1.1|Name=mRNA_P-wetherbeei_contig1645.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MSFVPPHCSTRAKYNMLVAQRHGKQGGAGVAGGTPDSNSDHGPTARSSGA
GSSEDSAAAAGSGGGGGRCSRGNARTAEKRDCANNVGRVSGAPGAIQPTK
PGSSHDGSGQEILVWRKRPSDAAMAAKSDPGFPSRVESKAGSPPAASAKT
AVAPAGAAKAAMGKAPAVAAASAGGCGAKPVSPAEATSEADEKGGGSSSH
ISKRAKRMLADVVERTGGGGSSGGAGKPAGSRPDGLPLPPLPPPLPLPGA
ASPPRRGLKRSSSRTAPESGSGQRGNGSGIGGSGGGGGAGSAAALRLRAD
DGSNGGNSAGATVDLGFGDDDDEDDDSGGRNHSAPPNGLPPMSQASARLL
ERATSGIARPIPTRRGALPPGMTDRSDQVVCGICQETADRPHSAACNHVC
CRECWMQWLRRPAEGRSGGAGGGVGCVGSGGIDGGGDGRPCPMCRAPVHA
SALVRLVFRPAESR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING