prot_P-wetherbeei_contig16372.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig16372.1.1
Unique Nameprot_P-wetherbeei_contig16372.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length156
Homology
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A840XHX9_9PROT (Sarcosine oxidase subunit gamma n=3 Tax=Roseomonas alkaliterrae TaxID=1452450 RepID=A0A840XHX9_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 6.580e-12
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 0
Query:   16 ILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAA---EARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRP-EHDRYGILVPRTLARTF 155
            +++V ARRGRE+AL+E  RA  G ALP  G++  +   TA+WI P  +LF A    E   A   AA  A +AA+ DQS G   + +   A    LA  CRLDL    F  G A  T +  +  ++ +  E   + + V  TLA  F
Sbjct:   36 MVQVMARRGREDALAEAARAAFGLALPPAGQAAAAPDATAVWIQPGHWLFAAPRGMEGALAARAAAAFAGLAAVADQSHGRTTIAVSGPAARRVLARGCRLDLHPRAFGPGRAAATQIAHVGCLIHQTDEAPVFELTVFATLAEPF 181          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: UPI0018EA9F00 (hypothetical protein n=2 Tax=unclassified Bosea TaxID=2653178 RepID=UPI0018EA9F00)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-8
Identity = 45/144 (31.25%), Postives = 72/144 (50.00%), Query Frame = 0
Query:   16 ILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADV---AAINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRPEHD--RYGILVPRTLA 152
            +++V+AR+GR+N +S  L       LPA GR    +  TA+W+ P ++L  A+  +  ++ A +   +   AA+ DQS G     L        LA LCRLDL    F +G +  T +G +   L+R E     + ++V  T A
Sbjct:   35 LVQVTARKGRQNDVSATLGHTFSIELPASGRVASGSAGTAIWVQPGSWLIRASGDQREDLAARLRQALDGTAAVVDQSHGRSVFELSGKHAHAVLARLCRLDLHDRAFPLGSSASTIVGHVSCQLYRNEAPVPSFSLIVGSTFA 178          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: UPI000DBE1290 (sarcosine oxidase subunit gamma n=1 Tax=Roseovarius amoyensis TaxID=2211448 RepID=UPI000DBE1290)

HSP 1 Score: 60.8 bits (146), Expect = 1.770e-8
Identity = 54/164 (32.93%), Postives = 73/164 (44.51%), Query Frame = 0
Query:    3 VSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGR------SEISTLDTA--LWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDL--SKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 156
            V   ++    L  +  V+  RGR+  LSE L+A  G A P PGR      +  S  D A  +W     FL   A+   A       A  AA++DQS G+    +     +  LA L  +DL  + F  GH  RT L  + A + R   D Y ILV R LA T +
Sbjct:   18 VGRMTLTEVDLGRLTSVAPYRGRDEGLSEALKAAHGIAAPEPGRVTGRVAARASGRDEACAIWFGQRMFLLAGADPDPAL------AQYAALSDQSDGWACARIQGRGATQVLARLTPIDLRPAAFRRGHTARTELQHMAASITRLGEDDYLILVFRALAGTLV 175          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A0C1J2B2_9RHOB (Sarcosine oxidase subunit gamma n=1 Tax=Ruegeria sp. ANG-R TaxID=1577903 RepID=A0A0C1J2B2_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 8.020e-7
Identity = 43/158 (27.22%), Postives = 75/158 (47.47%), Query Frame = 0
Query:    1 MRVSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDL--SKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 156
            + V   ++       I  +S  +G++ ALS++L+A  G A P+  R+       A+W  PA  + +      A +  AV      + DQS  +  + L+ +     LA +  +DL  S F  GH  RTPL  + A + R   + + I+V R++A+T +
Sbjct:   16 LTVGSVTLSEEEAVTIHSISPLKGKQKALSDVLKAAHGMACPSANRATGKAGARAVWFGPAHAMLIGPVPDVALMEHAV------VVDQSDAWTVVRLEGAGVEDVLARVVPVDLRSSHFKRGHTARTPLFHMTASITRVGENAFQIMVFRSMAKTLV 167          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A2M7ENN0_9RHOB (Sarcosine oxidase subunit gamma n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_65_11 TaxID=1974083 RepID=A0A2M7ENN0_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 8.360e-7
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 0
Query:   24 GRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADVA---AINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 156
            G+E A S LL ++ G   P P RS       A+W+                +G AV A VA   A+ DQS  +    L        LA L  LDL++  F  GHA R+ LG + AV+ R   + + I+V R++ART +
Sbjct:   39 GQEAAASALLSSLLGMECPHPNRSTGRDGARAVWVGRGQIFV---------VGKAVDASVARHAALTDQSDAWAVFSLQGHGVEDVLARLTPLDLNRAVFKRGHAARSLLGHMSAVILRTGENTFEIMVFRSMARTAV 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A840XHX9_9PROT6.580e-1236.99Sarcosine oxidase subunit gamma n=3 Tax=Roseomonas... [more]
UPI0018EA9F001.530e-831.25hypothetical protein n=2 Tax=unclassified Bosea Ta... [more]
UPI000DBE12901.770e-832.93sarcosine oxidase subunit gamma n=1 Tax=Roseovariu... [more]
A0A0C1J2B2_9RHOB8.020e-727.22Sarcosine oxidase subunit gamma n=1 Tax=Ruegeria s... [more]
A0A2M7ENN0_9RHOB8.360e-733.33Sarcosine oxidase subunit gamma n=1 Tax=Rhodobacte... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027266GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1GENE3D3.30.1360.120Probable tRNA modification gtpase trme; domain 1coord: 91..154
e-value: 2.0E-15
score: 59.0
NoneNo IPR availableGENE3D3.30.70.1520Heterotetrameric sarcosine oxidasecoord: 22..90
e-value: 2.0E-15
score: 59.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16372contigP-wetherbeei_contig16372:562..1029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16372.1.1mRNA_P-wetherbeei_contig16372.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig16372 562..1029 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig16372.1.1 ID=prot_P-wetherbeei_contig16372.1.1|Name=mRNA_P-wetherbeei_contig16372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MRVSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGRSEIS
TLDTALWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDM
SAGSLPLASLCRLDLSKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRT
LARTFI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027266TrmE/GcvT_dom1