prot_P-wetherbeei_contig1564.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig1564.1.1
Unique Name	prot_P-wetherbeei_contig1564.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	283

Homology

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 9.380e-29
Identity = 81/215 (37.67%), Postives = 119/215 (55.35%), Query Frame = 0

Query:    1 LLQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLVFDREPDNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYF------EPYLQRRHLWQVFELDERWERLQSRRLRLDSMSRAVSKRLRGDADDVDENDAMMLDDAAVERQYGSETEGQAEDRRGKEAWAAESRADRLQRAEAXXXXXXXXXXXXSTARVRGPEEVN 209
            LL+E F+TD D+ ++ TDRPERLQ RMP RGE  DAER+DEA+WI  QL      D   + ++A+E VL +   +  EVPFV H+RRDY         YL   HLW++++LDE W+++ +RR ++   SR + K + GD D  DEN++           Y SET    ++R  +E  + E+R  R++R++                  +G E VN
Sbjct:  323 LLKEKFLTDRDKMIQETDRPERLQLRMPSRGEASDAERQDEAQWIFHQLDLGFGVDEQ-MAKSAIEHVLRFLGVESQEVPFVWHYRRDYLWTSPQMNTYLTLDHLWKIYDLDETWDKVGNRRDKVAKASRTLWKLVDGDEDSDDENNSG----------YASETVDARDERLAEEETSKENRESRMRRSQLALEKAEAALTQAEDESAQGVERVN 526

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A7S1TTI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTI3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.610e-22
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAE----WILPQLVFDREPDNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRLD 120
            L E+F+T++D+++R  D PERLQ R+P R E+ ++ER+ E      WI  QL  D         R A+ +VL + Q++  EV F+ H+R+D+F P+L+R HLW++FELDERWE+L +RRL L+
Sbjct:    9 LVEHFLTEKDDELRDKDVPERLQLRLPNRPEMLESEREKERNQESLWIQQQL--DGVDKTSGEARVAIAEVLKFIQDNDFEVNFIWHYRKDFFRPHLEREHLWRIFELDERWEKLTARRLELE 129

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A7D9EVP0_PARCT (Transcription elongation factor SPT6 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EVP0_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 9.080e-13
Identity = 56/171 (32.75%), Postives = 84/171 (49.12%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLVFDREPDNPDL------VRAAVEK----------VLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRL----DSMSRAVSKRLRGDADDVDENDAMMLDDAAVER 152
            L++  +TD D ++R TD PER Q R        D E  DEAEWI  Q        N D       +++ V K           L+  +N   EVPF+AH+R++Y EP L+   LW+V+E DE+W +L +R+  L    + M      +L+ D D   + D  +L+   VE+
Sbjct:  266 LEKIHLTDRDNEIRITDMPERFQLREIASKPSEDGELDDEAEWIYRQAFMTMPVSNQDFQDGDKFIQSTVTKPPTAIPKIREALNLMRNQFFEVPFIAHYRKEYVEPELKIEDLWRVWEFDEKWCQLNTRKKNLKRLFEQMQTYQYNKLKEDPDKPLDEDERILEQDDVEK 436

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: L8HFM7_ACACA (Transcription elongation factor spt6 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFM7_ACACA)

HSP 1 Score: 76.6 bits (187), Expect = 5.820e-12
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 0

Query:    1 LLQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERK---DEAEWILPQLVFDREPDNPDLVRAAVEK---VLSYFQNDRMEVPFVAHHRRDYFE-PYLQRRHLWQVFELDERWERLQSRRLRLDSMSRAV 126
            LL E FIT EDE++R TD PERLQ R PG  E+   ER+    EAEWI  + VF   P       A V +   VL + +    EVPF+AH+R+DY+  P L    LW ++E DE++  + +++  L +M  A+
Sbjct:  179 LLAEKFITTEDERIRRTDIPERLQLRFPGL-ELPPVEREILGREAEWIFSR-VFQHRPGLDTHQHAMVTRIMQVLEFIRKQNYEVPFIAHYRKDYWRCPQLSPADLWLIYEWDEKFIHILTKKANLRAMYMAI 309

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: UPI00106BB133 (transcription elongation factor SPT6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BB133)

HSP 1 Score: 75.5 bits (184), Expect = 1.450e-11
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLVFDREPDNPD------LVRAAVEK----------VLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRL----DSMSRAVSKRLRGDADDVDENDAMMLDDAAVER 152
            L++  +TD D  +R TD PER Q R        D E  DEAEWI  Q        N D      L+++ V K           LS  +N   EVPF+A++R++Y EP L+   LW+V++ DE+W +L +R+  L    + M      +L+ D D   + D  +L+   +E+
Sbjct:  266 LEKIHLTDRDNDIRITDMPERFQLREIPTKPAEDGELDDEAEWIYRQAFMTMPISNQDFQDGDKLIQSTVTKPPTAIPKIREALSLMRNHFFEVPFIAYYRKEYVEPELKIEDLWRVWQFDEKWCQLNTRKKNLKRLFEQMQTFQYNKLKEDPDKPLDEDERILEHDDIEK 436

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A3P8WSA3_CYNSE (Transcription elongation factor spt6 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WSA3_CYNSE)

HSP 1 Score: 74.3 bits (181), Expect = 3.510e-11
Identity = 50/159 (31.45%), Postives = 86/159 (54.09%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQ----LVFDREPDNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRLDSMSRAVS----KRLRGDADDVDENDAMMLDDAAVER 152
            L+   +TD+D ++RTTD PER Q R        D E ++EAEWI       L    + +      A +++ L++ +N + EVPF+A +R++Y EP L    LW+V++ DE+W +L++R+  L  + + +     +++  D D    +    LD A +ER
Sbjct:   82 LESSHMTDQDNEIRTTDMPERFQLRAIPVKPAEDDELEEEAEWIFRHGFSTLTISMQ-EKLSFTIAKIKEALNFMRNQQFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLRTRKQNLTRLFQKMQSYQFEQISADPDKPLADGIRPLDTADMER 239

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A7I8VK79_9ANNE (Transcription elongation factor spt6 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VK79_9ANNE)

HSP 1 Score: 73.6 bits (179), Expect = 6.320e-11
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 0

Query:    5 YFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLV------------------FDR-EPDNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRLDSM 122
            Y+   ED  +R TD PER Q R        + E K EAEWI  QL                    DR E    D ++  +EKVL + +N + E+PF+ H+R++Y +P L    +WQ++ELDE++ +L +RR  L ++
Sbjct:  209 YYRRKEDHGIRQTDAPERFQIRDTPIQTATEEELKQEAEWIFTQLFEKKKLSKQDGFWQLYFGQTDRTETPTNDKLQERIEKVLLFIRNHQFEIPFIEHYRKEYVKPELCENEMWQIYELDEKYMQLMTRRENLKNL 345

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A6B2KW66_9EUKA (SH2 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW66_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 8.370e-11
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 0

Query:    1 LLQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLVFDREPDNP-DLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYF----------------EPYLQRRHLWQVFELDERWERLQSRRLRLDSMSRAVSKRLRGD 133
            +L E +IT ED+ ++ TD PER+Q R  G  EI D E +DEAEWI  +         P + +   +  VL +   + +E+PF+  +R+DY+                 P LQ++ LW +++ DE+W   QS++ +L  +  AVSK L  D
Sbjct:   56 VLIESYITPEDDLIKKTDIPERMQLRNIGPREI-DEELEDEAEWIYKKAFTQLHDYIPKEQLTERISDVLRFLWVENLEIPFIGTYRKDYWYSGPIPATEEENTAPIPPTLQQKDLWVIYDWDEKWVNFQSKKKKLKELYEAVSKHLTED 204

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A3M6UR78_POCDA (Transcription elongation factor spt6 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UR78_POCDA)

HSP 1 Score: 73.2 bits (178), Expect = 8.540e-11
Identity = 54/184 (29.35%), Postives = 90/184 (48.91%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLVFD------REP-----------DNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRL----DSMSRAVSKRLRGDADDVDENDAMMLDDAAVERQYGSETEGQAED 164
            L++  +T++D ++RT D PER Q R        D E  DEA+WI      D      ++P             P    A + + L+  +N   EVPF+A +R++Y EP L    LW+++E DE+W +L++R+  L    + M      +++   D+  ++D  +L    V+R  G ET  Q +D
Sbjct:  253 LEKGMLTNKDNEIRTADVPERFQVRDFAVKSTEDGELDDEADWIYKHAFLDLPISQQQDPLDGDAHSHAKTPKPYSAVAKIREALNLMRNHLYEVPFIASYRKEYIEPELNIEDLWKIWEYDEKWSQLRTRKENLHRLFEEMQNYQFNKIQESGDEPLDDDTRILQPEDVDRLDGVETMEQLKD 436

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BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Match: A0A674DZ22_SALTR (Transcription elongation factor spt6 n=8 Tax=Salmonidae TaxID=8015 RepID=A0A674DZ22_SALTR)

HSP 1 Score: 72.4 bits (176), Expect = 1.560e-10
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 0

Query:    2 LQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWIL------PQLVFDREPD-------------NPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLWQVFELDERWERLQSRRLRLDSMSRAVS----KRLRGDADDVDENDAMMLDDAAVER 152
            L+   +TD+D ++R+TD PER Q R        D E ++EAEWI       P +      D              P  + A +++ L++ +N   EVPF+A +R++Y EP L    LW+V++ DE+W +L+SR+  L  + R +     +++  D D    +    LD A +ER
Sbjct:  237 LESSHMTDQDNEIRSTDMPERFQLRSIPVKPAEDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTI-AKIKEALNFMRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQISADPDKPLADGIRPLDTADIER 409

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig1564.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQN4_ECTSI	9.380e-29	37.67	GTB1 RNA binding / hydrolase, acting on ester bond...	[more]
A0A7S1TTI3_9STRA	1.610e-22	44.72	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A7D9EVP0_PARCT	9.080e-13	32.75	Transcription elongation factor SPT6 n=2 Tax=Param...	[more]
L8HFM7_ACACA	5.820e-12	40.60	Transcription elongation factor spt6 n=1 Tax=Acant...	[more]
UPI00106BB133	1.450e-11	32.16	transcription elongation factor SPT6-like n=1 Tax=...	[more]
A0A3P8WSA3_CYNSE	3.510e-11	31.45	Transcription elongation factor spt6 n=1 Tax=Cynog...	[more]
A0A7I8VK79_9ANNE	6.320e-11	34.31	Transcription elongation factor spt6 n=1 Tax=Dimor...	[more]
A0A6B2KW66_9EUKA	8.370e-11	33.33	SH2 domain-containing protein n=1 Tax=Arcella inte...	[more]
A0A3M6UR78_POCDA	8.540e-11	29.35	Transcription elongation factor spt6 n=1 Tax=Pocil...	[more]
A0A674DZ22_SALTR	1.560e-10	30.46	Transcription elongation factor spt6 n=8 Tax=Salmo...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..247
None	No IPR available	COILS	Coil	Coil	coord: 180..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..174
None	No IPR available	PANTHER	PTHR10145:SF6	TRANSCRIPTION ELONGATION FACTOR SPT6	coord: 2..174
None	No IPR available	SUPERFAMILY	158832	Tex N-terminal region-like	coord: 63..123
IPR023319	Tex-like protein, HTH domain superfamily	GENE3D	1.10.10.650		coord: 30..164 e-value: 6.5E-24 score: 86.5
IPR028088	Helix-turn-helix DNA-binding domain of Spt6	PFAM	PF14641	HTH_44	coord: 33..123 e-value: 3.5E-18 score: 66.2
IPR017072	Transcription elongation factor Spt6	PANTHER	PTHR10145	TRANSCRIPTION ELONGATION FACTOR SPT6	coord: 2..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig1564	contig	P-wetherbeei_contig1564:1123..2632 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig1564.1.1	mRNA_P-wetherbeei_contig1564.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig1564 1123..2632 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig1564.1.1 ID=prot_P-wetherbeei_contig1564.1.1|Name=mRNA_P-wetherbeei_contig1564.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=283bp
LLQEYFITDEDEKVRTTDRPERLQKRMPGRGEIGDAERKDEAEWILPQLV
FDREPDNPDLVRAAVEKVLSYFQNDRMEVPFVAHHRRDYFEPYLQRRHLW
QVFELDERWERLQSRRLRLDSMSRAVSKRLRGDADDVDENDAMMLDDAAV
ERQYGSETEGQAEDRRGKEAWAAESRADRLQRAEAAAAAAQAAAEAASTA
RVRGPEEVNVGAAAAHAEALEAWRVRRAKHDREAAALEARRREAEELAGS
GMADSDDEEELAEEGRRRAAERAAVAAALAALG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023319	Tex-like_HTH_dom_sf
IPR028088	Spt6_HTH_DNA-bd_dom
IPR017072	TF_Spt6