prot_P-wetherbeei_contig1532.3.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig1532.3.2
Unique Name	prot_P-wetherbeei_contig1532.3.2
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	226

Homology

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.340e-56
Identity = 98/177 (55.37%), Postives = 130/177 (73.45%), Query Frame = 0

Query:   36 ARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADKFE--EYRTKEVSQEHTDSMIGSIGMIVQELV 210
            ARM+ +G DY  ++ GAPF DG +WDP+G +++A   D+KK+REAE+KHGRVAMLA++G++ AE FHPLF+G +YIG AI+HF+EI AR P FW LT+LAI  +E   I  G+ ++D VTG G ++ DYV GDLGFDPLGL   D+ E    +TKE++     +MIG  GMIVQELV
Sbjct:   90 ARMS-AGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRL-AMIGITGMIVQELV 264

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.260e-55
Identity = 105/213 (49.30%), Postives = 135/213 (63.38%), Query Frame = 0

Query:   14 AAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFG---DGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADKFEEYRTKEVSQEHTD----SMIGSIGMIVQELVDSKGILEHF 219
            AAFV P    +     +AA    +M  +G DYA S+ GAPFG   +G  +DP G A       +KK+REAELKHGRV+MLAA+GI+ +EVFHPLF+G  YIG A+ H Q+I    P+FWV ++  I  +EG+TI   W  V  VTG G+LK +Y  GDLGFDPLGL   D  E++R   +  +  D    +MIG +GMIVQE+VD KGILEH 
Sbjct:   19 AAFVAPIAAPRSSIARVAASSTPKMT-AGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDG-EDFRL--IQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 227

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 3.770e-54
Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 0

Query:   15 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 216
            AFV P  V        A+   A    +G DY  ++ GAPFGDG I+DPL  +  A  AD+KK+REAE+KHGRVAMLA+LG++ AE +HPLF+G +YIG A+ HFQEI A+ P FWV ++L +  +E  TI   +E    VTG G LK+DYV GDLGFDPL L   D+   +  +TKE++     +MIG  GM+VQEL++   IL
Sbjct:   20 AFVAPMAVRSAAP---ASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRL-AMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.110e-51
Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 0

Query:   15 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGL---GTADKFEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHF 219
            AFV P  V      + A+   A    +G DY  ++ GAPF DG I+DPL  +  A+  D+KK+REAE+KHGRVAMLA+LGI+ AE +HPLF+G ++IG AI HFQEI A+ P FW  ++L +  +E  TI   ++    VTG G LK+DY+ GDLGFDPL L   G A   +  +TKE++     +MIG  GM+ QELV+ + IL +F
Sbjct:   20 AFVAPVAVRSAAPASAAS---ALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEA-ALDVMKTKELNNGRL-AMIGIAGMLAQELVNGQDILPNF 222

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.120e-51
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0

Query:   15 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 216
            AFV P  V      + A+   A    +G DY  ++ GAPFGDG I+DPL  +  A   ++K +REAE+KHGRVAMLA +G+I AE +HPLF+G +YIG A+ HFQEI A+ P FW  ++L +  +E  TIT+ + +   VTG G L+D+Y  GDLGFDPL L   D+   E+ +TKE++     +MIG  GM+VQELV+   IL
Sbjct:   21 AFVAPMAVRSAAPASSAS---ALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRL-AMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.650e-47
Identity = 94/198 (47.47%), Postives = 123/198 (62.12%), Query Frame = 0

Query:   27 GKTLAAKRPARMAMSGLDYAESIEGAPFG-DGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVT-GAGDLKDDYVNGDLGFDPLGLGTAD---KFEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHF 219
            GK L A+     A+   D A ++ G PFG +G ++DPLG A+K S  ++K+Y+E ELKHGRVAMLA LG + AEVFHPLF     IG +I HFQ IE  VP FW+L +  IG+ E + I RGW K D +  G   LKD+Y+ GD GFDPL LG      KFE  R KE++     +M   +G+  QELV+ KG+ E+ 
Sbjct:   15 GKALQARPTTSSALKMAD-ASALIGKPFGAEGPVFDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMSFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRL-AMFAILGIWAQELVNGKGVFENI 210

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.100e-46
Identity = 82/164 (50.00%), Postives = 112/164 (68.29%), Query Frame = 0

Query:   59 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHFN 220
            I+DPLG A  A   D+K +REAE+KHGRVAMLA+LG++ AE +HP F+G +YIG A+ HFQEI AR P FW  ++LA+ ++E  TIT+ + +   VTG G L+D+Y  GDLGFDPL L   D+   E  +TKE++     +MIG  G +VQELV+   IL+  +
Sbjct:   16 IFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRL-AMIGIAGTLVQELVNPTNILDFLH 178

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.170e-44
Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 0

Query:   59 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 216
            I+DPLG +  A+  D+KK+REAE+KHGRVAMLA+LG+I AE +HP F+G +YIG A+ HFQEI A+ P FW  ++L +  VE  TI   ++    VTG G LK+DY+ GDLGFDPL L   D+   +  +TKE++     +MIG  GM+ QELV+   IL
Sbjct:   37 IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL-AMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.420e-42
Identity = 88/205 (42.93%), Postives = 127/205 (61.95%), Query Frame = 0

Query:   14 AAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 216
            AAFVTP  V      + A+   A    +G DY  ++ GA   +G I+D L  A  A   ++K +REAE+KHGRVAMLA +G++ AE +HP F+G +YIG A+ HFQEI A+ P FW  ++L +  +E  TI + + +   VTG G L+D+Y  GDLGFDP  +   D+   E+ + KE++     +MIG +GM+VQELV+ + IL
Sbjct:   20 AAFVTPMAVRSAAPASSAS---ALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRL-AMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.940e-42
Identity = 80/160 (50.00%), Postives = 109/160 (68.12%), Query Frame = 0

Query:   59 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 216
            I+DPLG +  A+  D+KK+REAE+KHGRVAMLA+LG+I AE +HP F+G +YIG A+ HFQEI A+ P FW  ++L +  +E  TI   ++    VTG G LK+DY+ GDLGFDPL L   D+   +  +TKE++     +MIG  GM+ QELV+   IL
Sbjct:  233 IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL-AMIGIAGMLAQELVNPADIL 391

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5B4_ECTSI	3.340e-56	55.37	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	3.260e-55	49.30	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	3.770e-54	49.02	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.110e-51	47.12	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	8.120e-51	47.06	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A836CGF9_9STRA	3.650e-47	47.47	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
D7G7Q7_ECTSI	2.100e-46	50.00	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.170e-44	50.63	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.420e-42	42.93	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	4.940e-42	50.00	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 35..223 e-value: 2.2E-33 score: 117.8
None	No IPR available	PANTHER	PTHR21649:SF125	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 9..218
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 36..219
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 52..208 e-value: 2.8E-27 score: 96.2
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig1532	contig	P-wetherbeei_contig1532:3856..5880 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig1532.3.2	mRNA_P-wetherbeei_contig1532.3.2	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig1532 3600..6977 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig1532.3.2 ID=prot_P-wetherbeei_contig1532.3.2|Name=mRNA_P-wetherbeei_contig1532.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MKAAMMIAALPTVAAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIE
GAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEV
FHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEK
VDGVTGAGDLKDDYVNGDLGFDPLGLGTADKFEEYRTKEVSQEHTDSMIG
SIGMIVQELVDSKGILEHFNPTIPP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln